PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004487099.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 719aa MW: 79444.7 Da PI: 8.344 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.4 | 1.5e-24 | 111 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_004487099.1 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RGE 201 89****************************986445444..8************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+++r+ XP_004487099.1 202 NGELCVGIRRA 212 999******97 PP | |||||||
2 | Auxin_resp | 114.3 | 1.1e-37 | 289 | 367 | 6 | 83 |
Auxin_resp 6 stksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ XP_004487099.1 289 GSNQPFEVVYYPRASTPEFCVKTSAVKAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVHVVDPIRWPNSPWRLLQ 367 5789*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-38 | 101 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-29 | 105 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.38E-23 | 110 | 211 | No hit | No description |
SMART | SM01019 | 5.1E-24 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.7E-23 | 111 | 212 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.253 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.6E-32 | 290 | 367 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.706 | 610 | 687 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MKEAEKSLDP QLWHACAGGM VQMPSVNSKV FYFPQGHAEH AQTNVDFGAS FRIPPLILCR 60 VASVKFLADP ETDEVFSKMT LIPLRSSELE NEDFDGVDGN ASENSEKPAS FAKTLTQSDA 120 NNGGGFSVPR YCAETIFPRL DYSAEPPVQT VIAKDVHGEV WKFRHIYRGT PRRHLLTTGW 180 SSFVNQKKLV AGDSIVFLRG ENGELCVGIR RAKRGIVGGL ETPSGWSSVN GSCGFGVGGY 240 GAFLREDNKL LRNGCGNLSP NGGGVGGNLG GGRVKVSGES VREAMRLGGS NQPFEVVYYP 300 RASTPEFCVK TSAVKAAMRI QWCSGMRFKM PFETEDSSRI SWFMGTISSV HVVDPIRWPN 360 SPWRLLQVTW DEPDLLHNVK RVSPWLVELV SNMSVIHLTP FSPPPRKKFR FPPHPDFPLD 420 VQFPIPTFSG NPFGTNNPLC CLSDNNNNAP ASIQGARHAQ IGISLSDFHL NNNKLELGVF 480 NPNHNEMMMI SNGSNIVKNN NHDKKNKESL SCLLTIGNNS HKSLEKSDNN NNSSSSNVNV 540 KRHQFLLFGQ PILTEQQISR KCCSNENKEK EKWFLSDTKS SEQFSSPGKS STVTSGDEVC 600 WKQQVGILDS GHCKVFLESE DVGRTIDLSR VGSYEELYTK LANMFGIERL SHVLYRDATG 660 AVKQTGEEPF SDFMKTAKRL TILMDSGSKD TRRVCITGTR NAERGLDASN KRGPLSIFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-65 | 8 | 388 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004487099.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC207600 | 0.0 | AC207600.4 Medicago truncatula chromosome 2 BAC clone mth2-31i16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487099.1 | 0.0 | auxin response factor 10 | ||||
Refseq | XP_012570270.1 | 0.0 | auxin response factor 10 | ||||
Refseq | XP_012570274.1 | 0.0 | auxin response factor 10 | ||||
Refseq | XP_027187385.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1S2XC78 | 0.0 | A0A1S2XC78_CICAR; Auxin response factor | ||||
STRING | XP_004487099.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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