PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487099.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 719aa    MW: 79444.7 Da    PI: 8.344
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487099.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.5e-24111212199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +
  XP_004487099.1 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RGE 201
                     89****************************986445444..8************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+++r+
  XP_004487099.1 202 NGELCVGIRRA 212
                     999******97 PP

2Auxin_resp114.31.1e-37289367683
      Auxin_resp   6 stksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      ++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  XP_004487099.1 289 GSNQPFEVVYYPRASTPEFCVKTSAVKAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVHVVDPIRWPNSPWRLLQ 367
                     5789*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-38101214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-29105212IPR015300DNA-binding pseudobarrel domain
CDDcd100177.38E-23110211No hitNo description
SMARTSM010195.1E-24111213IPR003340B3 DNA binding domain
PfamPF023629.7E-23111212IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253111213IPR003340B3 DNA binding domain
PfamPF065073.6E-32290367IPR010525Auxin response factor
PROSITE profilePS5174517.706610687IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MKEAEKSLDP QLWHACAGGM VQMPSVNSKV FYFPQGHAEH AQTNVDFGAS FRIPPLILCR  60
VASVKFLADP ETDEVFSKMT LIPLRSSELE NEDFDGVDGN ASENSEKPAS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPRL DYSAEPPVQT VIAKDVHGEV WKFRHIYRGT PRRHLLTTGW  180
SSFVNQKKLV AGDSIVFLRG ENGELCVGIR RAKRGIVGGL ETPSGWSSVN GSCGFGVGGY  240
GAFLREDNKL LRNGCGNLSP NGGGVGGNLG GGRVKVSGES VREAMRLGGS NQPFEVVYYP  300
RASTPEFCVK TSAVKAAMRI QWCSGMRFKM PFETEDSSRI SWFMGTISSV HVVDPIRWPN  360
SPWRLLQVTW DEPDLLHNVK RVSPWLVELV SNMSVIHLTP FSPPPRKKFR FPPHPDFPLD  420
VQFPIPTFSG NPFGTNNPLC CLSDNNNNAP ASIQGARHAQ IGISLSDFHL NNNKLELGVF  480
NPNHNEMMMI SNGSNIVKNN NHDKKNKESL SCLLTIGNNS HKSLEKSDNN NNSSSSNVNV  540
KRHQFLLFGQ PILTEQQISR KCCSNENKEK EKWFLSDTKS SEQFSSPGKS STVTSGDEVC  600
WKQQVGILDS GHCKVFLESE DVGRTIDLSR VGSYEELYTK LANMFGIERL SHVLYRDATG  660
AVKQTGEEPF SDFMKTAKRL TILMDSGSKD TRRVCITGTR NAERGLDASN KRGPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-65838851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487099.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2076000.0AC207600.4 Medicago truncatula chromosome 2 BAC clone mth2-31i16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487099.10.0auxin response factor 10
RefseqXP_012570270.10.0auxin response factor 10
RefseqXP_012570274.10.0auxin response factor 10
RefseqXP_027187385.10.0auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S2XC780.0A0A1S2XC78_CICAR; Auxin response factor
STRINGXP_004487099.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]