PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004487098.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 313aa MW: 35040.5 Da PI: 8.7037 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.8 | 1.4e-18 | 235 | 268 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C tkTp+WR+gp g+ktLCnaCG++yr+ + XP_004487098.1 235 CSHCEITKTPQWREGPKGPKTLCNACGVRYRSGR 268 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.5E-17 | 229 | 279 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-14 | 231 | 289 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.1E-15 | 233 | 266 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.675 | 233 | 265 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.97E-15 | 234 | 281 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 235 | 260 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.9E-16 | 235 | 268 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MSDPEDNSNK KESWFFDNDF NGLPDDIVFD DVLKFLDLPL EDVDPNGAEE DWSVQFQSLG 60 EPCFDAFSVS SAGLHGESKI RNEIPRTGKS LSAPYNEIPL IKQVAKIAGP TYGKTIPNQN 120 VPFYEKKDLH QYRSYSPVSV FEGSSTSSAE TSSFDLPVIP VKRARSKRRR PSILNPVFSI 180 SFIPPNSLAL QKYHKTPTSE SDSNKAKKPR KRDLSVLSGD VETSSSQDSV VTRKCSHCEI 240 TKTPQWREGP KGPKTLCNAC GVRYRSGRLY PEYRPAASPT FVESIHSNCH KKVMEMRCKV 300 IKECVRAPSR LAT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004487098.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487098.1 | 0.0 | GATA transcription factor 11-like | ||||
Refseq | XP_027190693.1 | 0.0 | GATA transcription factor 11-like | ||||
TrEMBL | A0A1S2XCA4 | 0.0 | A0A1S2XCA4_CICAR; GATA transcription factor 11-like | ||||
STRING | XP_004487098.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5758 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 3e-57 | GATA transcription factor 11 |