PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487098.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 313aa    MW: 35040.5 Da    PI: 8.7037
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.4e-18235268134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+C  tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_004487098.1 235 CSHCEITKTPQWREGPKGPKTLCNACGVRYRSGR 268
                     *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.5E-17229279IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-14231289No hitNo description
Gene3DG3DSA:3.30.50.109.1E-15233266IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.675233265IPR000679Zinc finger, GATA-type
CDDcd002021.97E-15234281No hitNo description
PROSITE patternPS003440235260IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16235268IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSDPEDNSNK KESWFFDNDF NGLPDDIVFD DVLKFLDLPL EDVDPNGAEE DWSVQFQSLG  60
EPCFDAFSVS SAGLHGESKI RNEIPRTGKS LSAPYNEIPL IKQVAKIAGP TYGKTIPNQN  120
VPFYEKKDLH QYRSYSPVSV FEGSSTSSAE TSSFDLPVIP VKRARSKRRR PSILNPVFSI  180
SFIPPNSLAL QKYHKTPTSE SDSNKAKKPR KRDLSVLSGD VETSSSQDSV VTRKCSHCEI  240
TKTPQWREGP KGPKTLCNAC GVRYRSGRLY PEYRPAASPT FVESIHSNCH KKVMEMRCKV  300
IKECVRAPSR LAT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487098.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487098.10.0GATA transcription factor 11-like
RefseqXP_027190693.10.0GATA transcription factor 11-like
TrEMBLA0A1S2XCA40.0A0A1S2XCA4_CICAR; GATA transcription factor 11-like
STRINGXP_004487098.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-57GATA transcription factor 11