PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004487036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 222aa MW: 26092.1 Da PI: 6.5222 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.6e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv v ++G ++W+ Ia+ g++Rt+k+c++rw +yl XP_004487036.1 8 KGPWTEEEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++ E+ l +d+ ++G++ W++Iar+++ gRt++++k++w++++ XP_004487036.1 61 RGKMSPHEERLVLDLQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.586 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-15 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-10 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.01 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.00E-10 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVQEEFRKGP WTEEEDFKLV SFVGLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMSPHEER LVLDLQSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA HEKKRGSIPS 120 TEHHSMDSHA SKKAGEESFY DTGGSKSSQV KIVGEEHEQE FSMDDIWKDI DISEENSLQQ 180 PEEVIIPPSS WEYNSSDSLW VMDEESMLFP MSDDPYFSRY AN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-27 | 1 | 110 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-27 | 1 | 110 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004487036.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052377 | 1e-160 | BT052377.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027189439.1 | 1e-162 | transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 4e-84 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A3Q7X706 | 1e-161 | A0A3Q7X706_CICAR; transcription factor MYB48-like | ||||
STRING | XP_004487036.1 | 1e-164 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 2e-86 | myb domain protein 48 |
Publications ? help Back to Top | |||
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