PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004487016.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 292aa MW: 32252.6 Da PI: 9.352

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.5e-39	72	131	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++lkcprC+stntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r++kk++ XP_004487016.1 72 ETTLKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTK 131 6789****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	72	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.2E-33	74	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.702	75	129	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	77	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVFSSIPSYL DPLNWHQQPN PHQANGSDSH QSHNLLPHGG GSMIRPSSIA NSNQAQVQTQ 60 TQAQQPKIQP QETTLKCPRC ESTNTKFCYY NNYNLSQPRH FCKTCRRYWT RGGALRNVPV 120 GGGCRRSKKT KKSTTTNTTS SKTPLLSNSN EKDYSLSNST SLGEFLHPTN NRTYLTPLGV 180 GNIGQMGFQI GDYSSNIAVG EGGGGLDQWR FQQFPFLNGF ESNSNVSYPF QSEIVEPPTT 240 SRVTHMPSSV KLENINGGLN LLRSSLSISE NNNHYNSWPD FSSLASSSAS HL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487016.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT148896	2e-71	BT148896.1 Medicago truncatula clone JCVI-FLMt-20F11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487016.1	0.0	dof zinc finger protein DOF3.1-like isoform X3
TrEMBL	A0A1S2XC38	0.0	A0A1S2XC38_CICAR; dof zinc finger protein DOF3.1-like isoform X3
STRING	XP_004487016.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	2e-37	Dof family protein