PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486956.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 444aa    MW: 50412.5 Da    PI: 6.4152
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.23.4e-21113209185
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 
                     +Wt++ v +Li++++ ++++   g            +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++t ++++++ ++ d
  XP_004486956.1 113 KWTDNVVGLLIAVVSCVGDDGTIGGvdgvkrksgvlQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTcCQVVENPALMD 207
                     7**************999888877555666777888**********************************************7578888888877 PP

        trihelix  84 ql 85 
                     ++
  XP_004486956.1 208 SM 209
                     77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-17111236No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNGSGLGAGF LSGPSGGILD LESPFHRHQQ TQLGHPNVTG QHHMNIMTGL ENDNRIGLIE  60
VKNLNAALSF GKGKAIAEDD LSEDDEHGYA EDGNCENFDG GKGKKGSPWQ RMKWTDNVVG  120
LLIAVVSCVG DDGTIGGVDG VKRKSGVLQK KGKWKTVSKI MISKGCHVSP QQCEDKFNDL  180
NKRYKRLNEI LGRGTCCQVV ENPALMDSMP NLTAKSKDDV RKILSSKHLF YKEMCAYHNG  240
QRIPNSHDLD LHSYSLEHGK DSRDNDGSED EDEDNNESED DELDNEININ AHGHGGRMEE  300
VYDRNKLSEE DGHFWPRSVA MEKLEVEMAR VFQDPAMSPW ERREWIKVQL LQLQEQNVGY  360
QVRALELQKQ RFKWLRYCSK KDRELEKLRM ENKRMKLENE RRILKLKQRE LEADVSRAEV  420
SLDPSSIGIN RPQGREHINL GRPQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486956.10.0uncharacterized protein LOC101493778 isoform X1
TrEMBLA0A1S2XBW10.0A0A1S2XBW1_CICAR; uncharacterized protein LOC101493778 isoform X1
STRINGXP_004486956.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-88sequence-specific DNA binding transcription factors