PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486954.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 322aa MW: 36375.9 Da PI: 7.8923

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.3e-05	159	178	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_004486954.1 159 FSCPLCFKTFNRYNNMQMHM 178 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.6E-5	159	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.66	159	186	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	161	181	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.57E-5	222	263	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.4E-4	230	263	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MSTDPYCSTG YCFDLNSPYL FSSSSLSSNN NTSTTTPFYF PSQYQSSPSS PPREALPLLN 60 LNPTKNEDLL ESSFSSMEMM NKSSSSLDDD DDGVTVALHL GLPSLSSADL LASNMFTTLV 120 SEKDDHQKQQ LTECPSNKIN RGQYWIPTPA QILIGPTQFS CPLCFKTFNR YNNMQMHMWG 180 HGSQYRKGPE SLRGTQPTAM LRLPCYCCAP GCKNNIDHPR SKALKDFRTL QTHYKRKHGI 240 KPFMCRKCCK AFAVRGDWRT HEKNCGKLWY CCCGSDFKHK RSLKDHIKAF GNGHKAYGID 300 IQDIDEPGSE IDQQENNESF QS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486954.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC161406	1e-176	AC161406.8 Medicago truncatula chromosome 2 BAC clone mth2-83p17, complete sequence.
GenBank	AC233177	1e-176	AC233177.2 Medicago truncatula strain A17 clone mth2-54k10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486954.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-126	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1S2XEE6	0.0	A0A1S2XEE6_CICAR; zinc finger protein WIP2-like
STRING	XP_004486954.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-122	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]