PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486898.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 430aa MW: 47044.8 Da PI: 6.5134

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.8e-10	218	276	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l se+ XP_004486898.1 218 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSEN 276 9***********************************************99988888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-15	214	278	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.013	216	279	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-11	218	269	No hit	No description
Pfam	PF00170	4.3E-9	218	276	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-10	218	273	No hit	No description
CDD	cd14703	1.38E-26	219	268	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MDKDKSLGLG SGFPPPSGRY SGYSPTGSAF NVKSEPSSSN YPPLIPGTSS DSSGFSHDIS 60 RMSDNPPRNR GHRRAHSEIL TLPDDISFDS DLGVVGGADG PSFSDDTEED LLSMYLDMDK 120 FNSSSATSSF QMGESSNAAG ASALGPTSVG QASGGENIGG GTTNERPRVR HQHSQSMDGS 180 TTIKPEMLVS GSDDMSAADS KKAMSAAKLA ELALIDPKRA KRIWANRQSA ARSKERKMRY 240 IAELERKVQT LQTEATSLSA QLTLLQRDTN GLNSENSELK LRLQTMEQQV HLQDALNDAL 300 KEEIQHLKVL TGQAIPPNGG PMMNFASFGG GQQFYPNNNH AMHTLLAAQQ FQQLQIHPQK 360 QQQHQQQQQH QHQFQQQMQQ QQHQQQQMQQ QQEQQQQQQQ SGDLKMRAAT PPCSKDNPSS 420 DVNPSVAKDC

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MDKDKSLGLG SGFPPPSGRY SGYSPTGSAF NVKSEPSSSN YPPLIPGTSS DSSGFSHDIS  60
RMSDNPPRNR GHRRAHSEIL TLPDDISFDS DLGVVGGADG PSFSDDTEED LLSMYLDMDK  120
FNSSSATSSF QMGESSNAAG ASALGPTSVG QASGGENIGG GTTNERPRVR HQHSQSMDGS  180
TTIKPEMLVS GSDDMSAADS KKAMSAAKLA ELALIDPKRA KRIWANRQSA ARSKERKMRY  240
IAELERKVQT LQTEATSLSA QLTLLQRDTN GLNSENSELK LRLQTMEQQV HLQDALNDAL  300
KEEIQHLKVL TGQAIPPNGG PMMNFASFGG GQQFYPNNNH AMHTLLAAQQ FQQLQIHPQK  360
QQQHQQQQQH QHQFQQQMQQ QQHQQQQMQQ QQEQQQQQQQ SGDLKMRAAT PPCSKDNPSS  420
DVNPSVAKDC

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486898.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-46	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486898.1	0.0	probable transcription factor PosF21
Refseq	XP_004486899.1	0.0	probable transcription factor PosF21
Refseq	XP_004486900.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-151	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1S2XBR6	0.0	A0A1S2XBR6_CICAR; probable transcription factor PosF21
STRING	XP_004486898.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-139	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]