PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486846.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 343aa    MW: 39411.3 Da    PI: 6.7028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_004486846.1 14 RGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding50.35.6e-1667109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l++++++ lG++ W+ Ia++++ gRt++++k++w+
   XP_004486846.1  67 RGSFSPQEASLIIELHTILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.506965IPR017930Myb domain
SuperFamilySSF466893.16E-2911108IPR009057Homeodomain-like
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
CDDcd001677.00E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.75966116IPR017930Myb domain
SMARTSM007175.6E-1566114IPR001005SANT/Myb domain
PfamPF002497.6E-1467110IPR001005SANT/Myb domain
CDDcd001679.82E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEASLIIE LHTILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHD  120
LHHVPSFSSD IHHCPTRNLS METFFPLNDN PTLTNSLHLH HHLDQLFLPS QNDNNLNFQH  180
LHNPMLPQTS SYEFDTWYSF MTSLPIHINP NQHTIQNYNN IILDNFINPN NTYQHYDTPN  240
LVELEPINVP KVICETNMKD YVCSIPFSSQ ENQIQESATA ILNHVEEGIC QQDHQIVATQ  300
VEYIDADLIM SSLPISSTTS SSFYQGDKLV TKPIIPSSNW ESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486846.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369551e-105AC136955.20 Medicago truncatula clone mth2-10p1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486846.10.0transcription factor MYB26-like
TrEMBLA0A1S2XBM20.0A0A1S2XBM2_CICAR; transcription factor MYB26-like
STRINGXP_004486846.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.26e-81myb domain protein 26