PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486834.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 420aa MW: 46847.5 Da PI: 7.8964

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_004486834.1 66 FICEICKKGFQREQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	13	0.0003	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_004486834.1 143 WKCEKCSKKYAVQSDWKAHSKTC 165 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.78E-7	65	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.01	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.658	66	88	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.5E-5	66	88	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	108	138	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	131	164	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.78E-7	138	163	No hit	No description
SMART	SM00355	140	143	163	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MSNLTSASGE ASANSSANII ENFSAQQTQT HDEAPSKKRR NLPGNPDPEA EVIALSPKTL 60 MATNRFICEI CKKGFQREQN LQLHRRGHNL PWKLKQRTNN EIIRKKVYVC PEATCVHHEA 120 SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR 180 RDSFITHRAF CDALAEESSN SKGLMNQVLP LKKEHENINF LIREQEIEIP CWLGESLSIH 240 ENPNPRNTLP SSSSSSPHMS ATALLQKAAQ MGAKTSSQSQ TFISGTHQHG HVSLVDFVKN 300 NNNNMVTSNV NFGLSMCEEE EEEMILNDHH AFIINSFTSF NEDAFAGNIL NSKNDNGGSD 360 GFTRDFLGLK PLSHSDIVLM ENCIKSSSSS SSHHQQKPSQ GMAHLETKAL QPQLDAPDTN

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MSNLTSASGE ASANSSANII ENFSAQQTQT HDEAPSKKRR NLPGNPDPEA EVIALSPKTL  60
MATNRFICEI CKKGFQREQN LQLHRRGHNL PWKLKQRTNN EIIRKKVYVC PEATCVHHEA  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR  180
RDSFITHRAF CDALAEESSN SKGLMNQVLP LKKEHENINF LIREQEIEIP CWLGESLSIH  240
ENPNPRNTLP SSSSSSPHMS ATALLQKAAQ MGAKTSSQSQ TFISGTHQHG HVSLVDFVKN  300
NNNNMVTSNV NFGLSMCEEE EEEMILNDHH AFIINSFTSF NEDAFAGNIL NSKNDNGGSD  360
GFTRDFLGLK PLSHSDIVLM ENCIKSSSSS SSHHQQKPSQ GMAHLETKAL QPQLDAPDTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-36	139	206	3	70	Zinc finger protein JACKDAW
5b3h_F	5e-36	139	206	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	105	KLKQRTNNEIIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486834.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148918	1e-155	AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027187324.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-125	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3Q7X0K8	0.0	A0A3Q7X0K8_CICAR; protein indeterminate-domain 7-like
STRING	XP_004486834.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-103	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]