PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 835aa MW: 91991.4 Da PI: 6.5412 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 14 | 72 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_004486776.1 14 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 72 5679*****************************************************97 PP | |||||||
2 | START | 174.7 | 5.8e-55 | 158 | 366 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W +++++++tl+v+ ++ g+++l XP_004486776.1 158 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDTLNVLPTAngGTIELL 251 7899******************************************************.8888888888****************9999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rd + +Ry+ l++g++vi+++S+ ++q+ p+ +++vRae+lpSg++i+p+++g+s +++v+h+dl+ ++++++lr+l+ XP_004486776.1 252 YMQLYAPTTLAPaRDLWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYMIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 346 *******************************************9988899********************************************* PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+++ ++kt++ +l+++++ XP_004486776.1 347 ESSTMLAQKTTMVALRHLRQ 366 ************99998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.175 | 9 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 11 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-17 | 13 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.86E-16 | 14 | 74 | No hit | No description |
Pfam | PF00046 | 7.9E-16 | 15 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-18 | 16 | 72 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.14E-6 | 66 | 105 | No hit | No description |
PROSITE profile | PS50848 | 24.824 | 148 | 349 | IPR002913 | START domain |
CDD | cd08875 | 2.56E-78 | 152 | 367 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.6E-22 | 157 | 363 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.4E-37 | 157 | 366 | No hit | No description |
SMART | SM00234 | 2.4E-41 | 157 | 367 | IPR002913 | START domain |
Pfam | PF01852 | 2.0E-52 | 158 | 366 | IPR002913 | START domain |
Pfam | PF08670 | 1.1E-51 | 692 | 834 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0048263 | Biological Process | determination of dorsal identity | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MSCKDGKGGL DNGKYVRYTP EQVEALERLY HDCPKPSSIR RQQLIRECPI LSHIEPKQIK 60 VWFQNRRCRE KQRKEASRLQ AVNRKLTAMN KLLMEENDRL QKQVSHLVYE NGYFRQHTQN 120 TTLATKDTSC DSAVTSGQRS LTAQHPPRDA SPAGLLSIAE ETLAEFLSKA TGTAVEWVQM 180 PGMKPGPDSI GIVAISHGCP GVAARACGLV GLEPTRVAEI LKDRPSWYRD CRAVDTLNVL 240 PTANGGTIEL LYMQLYAPTT LAPARDLWLL RYTSVLEDGS LVICERSLKN TQNGPSMPPV 300 QHFVRAEMLP SGYMIRPCEG GGSIIHIVDH MDLEPWSVPE VLRPLYESST MLAQKTTMVA 360 LRHLRQISHE VSQSNVTGWG RRPAALRALG QRLSRGFNEA LNGFTDEGWS MIGNDGADDV 420 TILVNSSPDK LMGLNLSFAN GFPSVSNAVL CAKASMLLQN VPPAILLRFL REHRSEWADN 480 NMDAYSAAAI KVGPCSLSGS RVGNYGGQVI LPLAHTIEHE EFLEVIKLEG IAHSPEDTIM 540 PREVFLLQLC SGMDENAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SGKEVVNPNR 600 TLDLASALDI GPAGNKVSND YSGNSGCMRS VMTIAFEFAF ESHMQEHVAS MARQYVRSII 660 SSVQRVALAL SPSNLSSQAG LRTPLGTPEA QTLARWICNS YRCFLGAELL KSNNEGSESL 720 LKSLWHHSDA ILCCTLKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD DHGRKILCSE 780 FPQIVQQGFA CLQGGLCISS MGRPISYERV VAWKVLNEEE NAHCICFMFM NWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00200 | DAP | Transfer from AT1G52150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486776.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486776.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A1S2XDZ7 | 0.0 | A0A1S2XDZ7_CICAR; homeobox-leucine zipper protein ATHB-15 | ||||
STRING | XP_004486776.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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