PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 179aa MW: 20067 Da PI: 10.1242 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.4e-09 | 34 | 57 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt lCr+f++ G C G++C++aHg XP_004486691.1 34 KTQLCRRFMQ-GVCFLGPKCNYAHG 57 9*********.*************8 PP | |||||||
2 | zf-CCCH | 22 | 2.9e-07 | 69 | 91 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr f+r+ +C+yG +C+F H XP_004486691.1 69 KLCRLFLRNKHCSYGHTCRFLHH 91 69********************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.92E-8 | 31 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-6 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-12 | 32 | 63 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 34 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.868 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 65 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.16 | 67 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-7 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-5 | 69 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MVETETYPET QPHFKKPRIS EETHFNNNVN LKTKTQLCRR FMQGVCFLGP KCNYAHGSSE 60 LRTTTTTPKL CRLFLRNKHC SYGHTCRFLH HSSQQSQPVV MKNPGCRMMQ TCAAAAAATI 120 DGNSSAQNKI MQTSTTPTTN ASTSTVATSS LHKNGPYGVK FIFKKKELQK ISGIYADWI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486691.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486691.1 | 1e-134 | mRNA decay activator protein ZFP36L2-like | ||||
TrEMBL | A0A1S2XEF8 | 1e-132 | A0A1S2XEF8_CICAR; mRNA decay activator protein ZFP36L2-like | ||||
STRING | XP_004486691.1 | 1e-133 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15954 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-11 | C3H family protein |