PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486628.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 37088.2 Da PI: 6.0914 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 150 | 194 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR ++ ++f L +P + kK +K +iL +A+ Y+k L XP_004486628.1 150 HIIAERKRRLELTQKFIALSATIPGL-----KKTDKTTILGEAISYVKVL 194 899***********************.....9***************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.205 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-14 | 148 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-6 | 150 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.15E-6 | 150 | 199 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-14 | 150 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-9 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDQSCQNSPL HLEVCDLENM AEQCQNSIDD DDEFLRNIFL QQPEEAKSSS ESENQLQYLQ 60 LQNNNNRSEK RVHNSKMTTP RTFIISFDKS TIIPAATVEV EEEPNKRMER RSGSKLPNSP 120 LSENKKSMDS KSKANQGGKK SRSDSQYLDH IIAERKRRLE LTQKFIALSA TIPGLKKTDK 180 TTILGEAISY VKVLKERVRE LEERNKMKTE STIILNKNDF CSNDTNLEDW CELLPDVKVR 240 VLENEVLIEI HCEKQNGIEI KILDLLENNL HLLVTASSVL PFGNSTLGIT IIAQMGVAYK 300 VTVNDLVKPL RQLLLNIRTN KTDPY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 158 | ERKRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486628.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486628.1 | 0.0 | transcription factor bHLH18-like isoform X1 | ||||
Swissprot | Q9T072 | 1e-40 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A1S2XB41 | 0.0 | A0A1S2XB41_CICAR; transcription factor bHLH18-like isoform X1 | ||||
STRING | XP_004486628.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13110 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-30 | bHLH family protein |