PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486568.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 714aa    MW: 80188.9 Da    PI: 5.6162
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-162980556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++t+ q+ +Le++ +++++p++++r++LA+++gL+ +q+k+WFqN+R+  k
  XP_004486568.1 29 KRLTSAQTAVLENFMKECHHPDEAQRRQLAEEVGLEPKQIKFWFQNKRTLLK 80
                    6789********************************************8665 PP
2START135.27.1e-432274486206
                     HHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   6 aaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     a++elv+++ ++ep+W  ss++++g+++l k + ++v              e ++ sg+v    ++lv  +ld+  +W++ ++    kaet++v 
  XP_004486568.1 227 AMEELVRLVRVNEPFWINSSTNQDGKYTLLKDSYEQVfpknnhfkganVCEESSKYSGIVNLSGVQLVDMFLDTV-KWTNLFPtivtKAETIKVF 320
                     799**************************9999999999999999987556899*********************.****9999999******** PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     ++g      gal lm+ e+  lsplv  R+f +vRy++q   g+wvi dvS ds+++p+ +ss+ R+ ++pSg++i++++ng + vtwvehv+++
  XP_004486568.1 321 ETGsvgnrdGALLLMYEEMHILSPLVRpREFHIVRYCKQVDVGVWVITDVSFDSTSQPN-TSSLSRSWKHPSGCIIREMPNGACLVTWVEHVEVD 414
                     ************************9866******************************9.9********************************** PP

                     SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +++  h+l+r lv+s    ga  w + lqr c++
  XP_004486568.1 415 DKIHsHQLYRDLVNSFSLYGAESWIKELQRMCQR 448
                     **988***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-18879IPR009057Homeodomain-like
PROSITE profilePS5007114.9972282IPR001356Homeobox domain
SMARTSM003891.4E-142486IPR001356Homeobox domain
SuperFamilySSF466896.53E-162587IPR009057Homeodomain-like
PfamPF000463.6E-142980IPR001356Homeobox domain
CDDcd000863.20E-153083No hitNo description
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PROSITE profilePS5084842.687213451IPR002913START domain
SuperFamilySSF559619.3E-33216448No hitNo description
CDDcd088751.08E-90217447No hitNo description
SMARTSM002346.9E-26222448IPR002913START domain
PfamPF018528.2E-36227448IPR002913START domain
Gene3DG3DSA:3.30.530.202.6E-13281448IPR023393START-like domain
SuperFamilySSF559611.06E-10471644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MDYSMGGGSG SGDEDIDNLQ NGKRSSSYKR LTSAQTAVLE NFMKECHHPD EAQRRQLAEE  60
VGLEPKQIKF WFQNKRTLLK NQHERENNST LRAENERIHN ENYLIREALK ATICSTCGGP  120
PFPEEEHERF MNHMQEENAK LKEECEKVSN FLARYMEKEI SLPELEQALN SIEAFSRDME  180
PEISLNQTVG ESSSQVNGNL TMHQAGMFST GNYDTEKLMM SQIVAIAMEE LVRLVRVNEP  240
FWINSSTNQD GKYTLLKDSY EQVFPKNNHF KGANVCEESS KYSGIVNLSG VQLVDMFLDT  300
VKWTNLFPTI VTKAETIKVF ETGSVGNRDG ALLLMYEEMH ILSPLVRPRE FHIVRYCKQV  360
DVGVWVITDV SFDSTSQPNT SSLSRSWKHP SGCIIREMPN GACLVTWVEH VEVDDKIHSH  420
QLYRDLVNSF SLYGAESWIK ELQRMCQRSV SFFLERIPIH ESRGVIQTIE GRKGVMKFAH  480
RMVKMFCECL TMTGQLEFQH LSLDSIGGVR VSVRKTTSTG QPNGMVVAAA TTLWLPLSAD  540
KVFEFLRDPT KRSQWDVLSC GNPVHEIAHI SNGLYPGNCI SIIQPFIPSE NHTLILQESF  600
TSPVGSYVIY AATDTTSMNV AIRGEDSKEL QILPSGFVVC SKGQPNVTLE ETFNNGNSSV  660
DGSGGTLLTL AYQILTSSTN GIDKPLNMES VATVNTLLSN TILKVKEALM TSTT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486568.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486568.10.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A1S2XAZ40.0A0A1S2XAZ4_CICAR; homeobox-leucine zipper protein HDG11-like
STRINGXP_004486568.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-180homeodomain GLABROUS 11