PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486524.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 322aa    MW: 36781.8 Da    PI: 5.4049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.5e-182673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
   XP_004486524.1 26 RGPWTVDEDLALINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding50.54.8e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_004486524.1  79 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4712177IPR017930Myb domain
SuperFamilySSF466894.12E-3123120IPR009057Homeodomain-like
SMARTSM007173.5E-152575IPR001005SANT/Myb domain
PfamPF002493.0E-162673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-222780IPR009057Homeodomain-like
CDDcd001677.92E-122873No hitNo description
SMARTSM007172.9E-1478126IPR001005SANT/Myb domain
PROSITE profilePS5129418.37878128IPR017930Myb domain
PfamPF002498.0E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2281127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEEVKGSENN SNITMLQTED EMDLRRGPWT VDEDLALINY IATHGEGRWN SLARSAGLKR  60
TGKSCRLRWL NYLRPDVRRG NITLEEQLLI LELHSRWGNR WSKIAQYLPG RTDNEIKNYW  120
RTRVQKHAKQ LKCDVNSKQF KDAMRYLWMP RLVERIQAAA STATTTTTNN NGSPSVTTTI  180
TSTNNTMSCN LNTNFEVHSG NTLTPIIMNN NLCGSYVTQS YTPENSSNGS DSFGTQVSPI  240
SELNQDYYNV PVGSNNNNNN PNCDYFQQAQ QFGFLDCITS PTGLFPQMDF NSVEPNTPWI  300
NQGDNFWNDE NMLLFQQLND NM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252312024120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684800.0EF468480.1 Medicago truncatula MYB transcription factor MYB39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486524.10.0transcription factor MYB108-like
TrEMBLA0A1S2XAX30.0A0A1S2XAX3_CICAR; transcription factor MYB108-like
STRINGXP_004486524.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.19e-86myb domain protein 78