PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486392.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family G2-like
Protein Properties Length: 302aa    MW: 33018.7 Da    PI: 7.3071
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.11.9e-334296155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  XP_004486392.1 42 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-323996IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-234296IPR006447Myb domain, plants
SuperFamilySSF466899.85E-174298IPR009057Homeodomain-like
PfamPF002491.9E-74495IPR001005SANT/Myb domain
PfamPF143792.1E-15126171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYPRLIHPHE GIVGQEDLQG GVGVGVSNHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT  60
QLGGASKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGMTG SYLLESPGTD NTSPKLPTSD  120
TNEGYEIKEA LRAQMEVQSK LHLQVEAEKH LQIRQDAERR YMAMLERACK MLADQFIGAT  180
VIDTDNQKFQ GIGNKAPRGS LVDHLGFYSL PSTEVAGVNA PEEEIPPCLP SQRADCSTES  240
CLTSHESSGG LTLEGSPGVG KRRMLGMDSM AAPLIWSEAK MKTQAINLAQ GNNPLGITRY  300
GM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-194295154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-194295154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-194295154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-194295154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486392.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486392.10.0protein PHR1-LIKE 3-like isoform X2
RefseqXP_004486393.10.0protein PHR1-LIKE 3-like isoform X2
RefseqXP_027186962.10.0protein PHR1-LIKE 3-like isoform X2
SwissprotQ8LAJ73e-54PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A1S2XDR60.0A0A1S2XDR6_CICAR; protein PHR1-LIKE 3-like isoform X2
STRINGXP_004486388.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-56G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]