PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 302aa MW: 33018.7 Da PI: 7.3071 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.1 | 1.9e-33 | 42 | 96 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_004486392.1 42 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-32 | 39 | 96 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 42 | 96 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 9.85E-17 | 42 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-7 | 44 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.1E-15 | 126 | 171 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MYPRLIHPHE GIVGQEDLQG GVGVGVSNHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT 60 QLGGASKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGMTG SYLLESPGTD NTSPKLPTSD 120 TNEGYEIKEA LRAQMEVQSK LHLQVEAEKH LQIRQDAERR YMAMLERACK MLADQFIGAT 180 VIDTDNQKFQ GIGNKAPRGS LVDHLGFYSL PSTEVAGVNA PEEEIPPCLP SQRADCSTES 240 CLTSHESSGG LTLEGSPGVG KRRMLGMDSM AAPLIWSEAK MKTQAINLAQ GNNPLGITRY 300 GM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-19 | 42 | 95 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-19 | 42 | 95 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-19 | 42 | 95 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-19 | 42 | 95 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486392.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486392.1 | 0.0 | protein PHR1-LIKE 3-like isoform X2 | ||||
Refseq | XP_004486393.1 | 0.0 | protein PHR1-LIKE 3-like isoform X2 | ||||
Refseq | XP_027186962.1 | 0.0 | protein PHR1-LIKE 3-like isoform X2 | ||||
Swissprot | Q8LAJ7 | 3e-54 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A1S2XDR6 | 0.0 | A0A1S2XDR6_CICAR; protein PHR1-LIKE 3-like isoform X2 | ||||
STRING | XP_004486388.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 1e-56 | G2-like family protein |
Publications ? help Back to Top | |||
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