PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486390.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

G2-like

Protein Properties

Length: 316aa MW: 34422.2 Da PI: 7.2909

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_004486390.1 42 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.569	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-32	39	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-24	42	97	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.29E-16	42	98	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-7	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-15	140	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MYPRLIHPHE GIVGQEDLQG GVGVGVSNHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT 60 QLGGASKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQS GKDIGEGCKD GMTGSYLLES 120 PGTDNTSPKL PTSDTNEGYE IKEALRAQME VQSKLHLQVE AEKHLQIRQD AERRYMAMLE 180 RACKMLADQF IGATVIDTDN QKFQGIGNKA PRGSLVDHLG FYSLPSTEVA GVNAPEEEIP 240 PCLPSQRADC STESCLTSHE SSGGLTLEGS PGVGKRRMLG MDSMAAPLIW SEAKMKTQAI 300 NLAQGNNPLG ITRYGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-19	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT139793	0.0	BT139793.1 Medicago truncatula clone JCVI-FLMt-13F21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486389.1	0.0	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_004486390.1	0.0	protein PHR1-LIKE 2-like isoform X1
TrEMBL	A0A1S2XAM3	0.0	A0A1S2XAM3_CICAR; protein PHR1-LIKE 2-like isoform X1
STRING	XP_004486388.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-63	G2-like family protein