PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486347.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 344aa    MW: 39412 Da    PI: 7.0107
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.96.4e-29228313186
        trihelix   1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ ev+aLi +r+++e+r++ +g++k+  Wee+s++++  g++rs+k+Ckekwen+nk+yk++  + kkr + +s+tcpyfd+l+
  XP_004486347.1 228 RWPDVEVQALISVRTSLEHRFGlTGSSKGSIWEEISEALHGLGYNRSAKKCKEKWENINKYYKRTVGSGKKR-PLNSKTCPYFDELD 313
                     8*********************789*******************************************9997.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-4221285IPR009057Homeodomain-like
PROSITE profilePS500907.526221286IPR017877Myb-like domain
SMARTSM007170.0093225288IPR001005SANT/Myb domain
CDDcd122032.98E-24227292No hitNo description
PfamPF138379.4E-23227315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDLFAAEHVA PFPDTGDLLF AAGLLSNHHN PQKLRPIRSL PPPPGYVVHA ELPHKNLDTL  60
EPSIHPLHPN GSGSGHSQLP RVHESSSSLD DEDDVENSSG STKEFGSRKR RKKTARKIED  120
FVENLVKKVM EKQEQMHNEL MEMIDKKEKE RIQREEAWRR EEMERIKKDE EARARERSRN  180
LALISFLQKL SGHEIPIPQP AEESRKTEEN ETEVNNRKDF NSDPSNNRWP DVEVQALISV  240
RTSLEHRFGL TGSSKGSIWE EISEALHGLG YNRSAKKCKE KWENINKYYK RTVGSGKKRP  300
LNSKTCPYFD ELDNLYRNGT LSIGNALSNT NSVSKNEEKE QCEI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486347.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486347.10.0trihelix transcription factor GT-2 isoform X1
RefseqXP_004486348.10.0trihelix transcription factor GT-2 isoform X2
TrEMBLA0A1S2XAJ90.0A0A1S2XAJ9_CICAR; trihelix transcription factor GT-2 isoform X1
STRINGXP_004486348.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-49Trihelix family protein