PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486330.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 551aa    MW: 61919.9 Da    PI: 6.6695
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.81.5e-1261795492374
            GRAS   2 velLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++L++cA+avs+gd++ a a++++ l +++s  g p+qRl ay++e+L+arl +s+s +ykal+++e +   s+e +++++++++v+P+ kf++
  XP_004486330.1 179 KDVLIKCAQAVSDGDFQTALAFMNNvLGKMVSVCGLPIQRLGAYMLEGLRARLESSGSVIYKALKCEEPT---SKELMSYMHILYQVCPYWKFAY 270
                     789********************8636788***************************************9...99999***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     lt N  I ea+++e+r+HiiDf+i qG+QW+ L+qaLa Rp+g+p +R+Tg+++++s+  +   l  +g+rL+++A+++gvpfef+  va    +
  XP_004486330.1 271 LTSNVVICEAMQNESRIHIIDFQIAQGTQWLLLMQALARRPGGSPFIRVTGIDDSQSShaRGGGLDIVGKRLSDYAKSCGVPFEFHS-VAMYGCE 364
                     ******************************************************9988889999***********************.6888999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +e ++L v++gEalaVn+ ++lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+++yy+a+f+s+++ lpr++++ri
  XP_004486330.1 365 VEQKDLVVQHGEALAVNFPFALHHMPDESVSTENHRDRLLRLVKSLSPKVVILVEQESNTNTSPFFNRFVETMSYYTAMFESIDVALPRNDKKRI 459
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+++++r+ivn++aceg er+erhe ++kWr+r+++aGF p+pls ++ +++++ll++++++ yr+e+ +  ++l Wk+r++ + SaWr
  XP_004486330.1 460 SAEQHCVARDIVNMIACEGGERVERHELFGKWRARFSMAGFVPLPLSPSVIDSVRSLLNEFDEN-YRLEHIDVVIYLAWKSRAMCTSSAWR 549
                     **************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.579152530IPR005202Transcription factor GRAS
PfamPF035145.3E-124179549IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MQTSPKKTNS AGIHIYHQHK PVQEIIDSYT HYKLSQKQSY SFNDSSSQGT NNVSYETSKR  60
DQFYTLESSQ GFIDFDSPSS ASVSSSSNNR SNPFLSPQVS HSHSSNYTNG SPISVHSTDN  120
GNYELKHKLK ELEISLLGPE SDIVDSSQCC SKGSSSSSHQ QGEYNWSQIE EMIPKLDLKD  180
VLIKCAQAVS DGDFQTALAF MNNVLGKMVS VCGLPIQRLG AYMLEGLRAR LESSGSVIYK  240
ALKCEEPTSK ELMSYMHILY QVCPYWKFAY LTSNVVICEA MQNESRIHII DFQIAQGTQW  300
LLLMQALARR PGGSPFIRVT GIDDSQSSHA RGGGLDIVGK RLSDYAKSCG VPFEFHSVAM  360
YGCEVEQKDL VVQHGEALAV NFPFALHHMP DESVSTENHR DRLLRLVKSL SPKVVILVEQ  420
ESNTNTSPFF NRFVETMSYY TAMFESIDVA LPRNDKKRIS AEQHCVARDI VNMIACEGGE  480
RVERHELFGK WRARFSMAGF VPLPLSPSVI DSVRSLLNEF DENYRLEHID VVIYLAWKSR  540
AMCTSSAWRC Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-611825498375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486330.10.0scarecrow-like protein 21
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1S2XDL80.0A0A1S2XDL8_CICAR; scarecrow-like protein 21
STRINGXP_004486330.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13