PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004486291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 307aa MW: 34736.9 Da PI: 6.2301 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3e-17 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g XP_004486291.1 48 KFLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAQEAAFAYDRAALSIKG 97 678******.**********933...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-32 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-28 | 48 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.508 | 48 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-20 | 48 | 106 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.51E-28 | 48 | 104 | No hit | No description |
PRINTS | PR00367 | 1.9E-7 | 49 | 60 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-10 | 50 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-7 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MSTSRTSNTS LKAYDQNQTQ INLSLLQRNT SPACGEKRGR RKQTEPGKFL GVRRRPWGRY 60 AAEIRDPNTK ERHWLGTFDT AQEAAFAYDR AALSIKGSQA RTNFIYSSSS NHHDHDTNLH 120 DLNVQSLLPS SNLNINNTTH NKKTQPTNHI EKQSSSNMNN DNMCHVHEPY DNFFFSNDSY 180 KSGYLECIVP VNCFNPVSNF GNASASSEQQ QNVVDSISTT NFGQSFFDYN AFSQQDLSMQ 240 KMATSETSDQ DLWDYCNYNE LSAIFNKPVR SEEESCMYAL CPSMTTNDVS STTYSSFGDV 300 NMGYSLF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 39 | 104 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004486291.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC186295 | 1e-104 | AC186295.3 Medicago truncatula chromosome 2 BAC clone mth2-26g6, complete sequence. | |||
GenBank | AC205391 | 1e-104 | AC205391.2 Medicago truncatula chromosome 2 BAC clone mth2-38p15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486291.1 | 0.0 | ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A1S2XAH4 | 0.0 | A0A1S2XAH4_CICAR; ethylene-responsive transcription factor ERF086 | ||||
STRING | XP_004486291.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5784 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18560.1 | 4e-47 | ERF family protein |