PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 567aa MW: 60736.3 Da PI: 8.3761 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.2e-31 | 312 | 370 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ XP_004486177.1 312 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILVTTYEGTHNHP 370 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-33 | 296 | 372 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-28 | 304 | 372 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.849 | 306 | 372 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-37 | 311 | 371 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 313 | 370 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MDKGWGLALD TSPSSPIPSL PFLPSKQPSA SSFNTNDRMF PIFGFPVNLS RNTSNAEDGD 60 RKVIGEVDFF SERNNKPSHV KSNNTVKKEI ITTDEKSPIS NIHVNTGLQL ANTGSDQSVV 120 DDAVSSDAEN KRAKTTELAQ LQVELQRMNS ENKKLKEMLS HVTGNYTALQ MQLVALMQKN 180 HHTANEVVNA KSEEKKQGVG GGRVPRQFLE IGPSGTAAEV DDQVSNSSSD ERTRSNTPQI 240 EAAGTTRDHI VRNNNGKNGR EESSDSESQG WGSNKVQKIL NPSNPIDQST TEATMRKARV 300 SVRARSEASM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDTTILV 360 TTYEGTHNHP LPPAAMAMAS TTSAAASMLL SGSMSSADGI MTPNLLARAI LPCSTSMATL 420 SASAPFPTVT LDLTQNSNSN PNPNSNPLQF QRPHAPFQVP FFQGQPQNFA QAAAIYNQSK 480 FSGLQLSQEI GSSHLTTQAS SSTQPPPQHP SLADSVSAAT AAITADPNFT AVLAAAISSI 540 IGGAHGNNNN NSNNNSSRNT ISSFSGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-23 | 298 | 374 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486177.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486177.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-150 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1S2XAB0 | 0.0 | A0A1S2XAB0_CICAR; probable WRKY transcription factor 31 | ||||
STRING | XP_004486177.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-123 | WRKY family protein |