PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 487aa MW: 51622.4 Da PI: 8.3885 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.6 | 7.8e-12 | 50 | 75 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C +G+rC+F+H++ XP_004486037.1 50 DEVDCTYYLRTGFCGFGSRCRFNHPR 75 6789********************96 PP | |||||||
2 | zf-CCCH | 34.4 | 3.8e-11 | 97 | 121 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rt Ck+G++Ck++H++ XP_004486037.1 97 QPVCQYYMRTRSCKFGASCKYHHPR 121 689********************96 PP | |||||||
3 | zf-CCCH | 39.1 | 1.2e-12 | 142 | 166 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++fa+tG+Ck+G++CkF H+ XP_004486037.1 142 GEKECSYFAKTGQCKFGATCKFDHP 166 7899********************9 PP | |||||||
4 | zf-CCCH | 29.9 | 9.7e-10 | 355 | 378 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ++ + G Ck+G++CkF H+ XP_004486037.1 355 AAPCTHYTQRGVCKFGPTCKFDHP 378 589********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.9E-5 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.652 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 50 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-9 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.446 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-9 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 99 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-10 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 142 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 146 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 352 | 380 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 352 | 379 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 355 | 379 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 355 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-5 | 357 | 377 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MDHYPRSTEP SRSDPSPEWT GPDPQTGLEE PMWQLGLNGA AEDSYPQRPD EVDCTYYLRT 60 GFCGFGSRCR FNHPRDRGTV IGAASRTVGD YPERAGQPVC QYYMRTRSCK FGASCKYHHP 120 RQTGGTASPV SLNYYGYPLR PGEKECSYFA KTGQCKFGAT CKFDHPVSAG VQIPAPSPGP 180 PVSPLHVPVP SPLYPTVQTP SGPSSQQIGV LVARPSLLQG SFVQSPYGPV VLSPTMVPFS 240 GWGPYQATAT SPVLPSSAPA NVGSPQLYGI TQLPSTANAY TGPYQPSGSS VGPSSRSQKE 300 HSFAARPNQP EYHYYSRTDE LPFSPSYRYH QPPDMSAPKV NVALSPAGLP LRPGAAPCTH 360 YTQRGVCKFG PTCKFDHPIV SLSYSPSASS LTDVPVAPYF VGSSVGTLAP PSSSSELQPE 420 LTTGSSKESV PSRISSSAST TTGSVGLTLS TGGPVSQSST RSRSSSPLAA VNTTTSSNVS 480 HTSSSEM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486037.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC205391 | 1e-111 | AC205391.2 Medicago truncatula chromosome 2 BAC clone mth2-38p15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486037.1 | 0.0 | zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q6NPN3 | 1e-139 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A1S2XC79 | 0.0 | A0A1S2XC79_CICAR; zinc finger CCCH domain-containing protein 34-like | ||||
STRING | XP_004486037.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-119 | C3H family protein |
Publications ? help Back to Top | |||
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