PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485979.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 908aa    MW: 100633 Da    PI: 6.6442
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_004485979.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfpsldfsQQPPA--QELIARDLHGHEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_004485979.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp119.91.9e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m+fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  XP_004485979.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMMFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-43119242IPR015300DNA-binding pseudobarrel domain
CDDcd100174.32E-22126227No hitNo description
SMARTSM010196.8E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056127229IPR003340B3 DNA binding domain
PfamPF023626.9E-23127228IPR003340B3 DNA binding domain
PfamPF065078.1E-35253336IPR010525Auxin response factor
PfamPF023099.8E-8763860IPR033389AUX/IAA domain
SuperFamilySSF542775.3E-6774850No hitNo description
PROSITE profilePS5174520.999775859IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MRLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE  60
VDAHIPNYPS LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLNAQEQKEA YLPAELGTAS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSQ QPPAQELIAR DLHGHEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL TKYVKAVYHT RVSVGMRFRM  300
MFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHGMKDD DFGMNSPLLW LRDTDRGLQS LNFQGIGVNP  420
WMQPRFDPSM LNMQADMYQA VAAAALQDMR SVDPSKQHPG SLHQFQQPLN FANRTAALMQ  480
AQMLQHSQQP QQAFQNNLEN QHLSQSQPQT QTHPQQHLQH QHSFNNQLHH HNQQQQQPTQ  540
QVVDNSQQIS GAVSTMSQFV SAAPQLQSPP MQQALSSLCN QQSFSDSNVN SSTTIVSPLH  600
SILGSFPQQD ETSHLLSLPR TNSWVPVQNS TGWPSKRVAV DPLLSSGAAQ CILPQAEQLG  660
QPQNTISQNA ITLPPFPGRE CSIDQEGSND PQSNLLFGVN IDPSSLLMHN GMSNFKGISG  720
GNSDSSTMPY QSSNYMNTAG NDSSLNHGVT SSIGDSGFLR TPENAQQGNN NPLNETFVKV  780
YKAGSYGRSL DITNFSSYHE LRGELARMFG LEGELEDPVR SGWQLVFVDR ENDVLLLGDG  840
PWPEFVSSVW CIKILSPEEV QQMGNTGLGL LNSVPIQRLS NGICDGYVSR QDPRSLSSGI  900
TTVGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485979.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S2XCU00.0A0A1S2XCU0_CICAR; Auxin response factor
STRINGXP_004485979.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]