PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004485895.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 306aa MW: 34856 Da PI: 5.1526 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.7 | 2e-15 | 21 | 112 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + +ss++p+f++l+a XP_004485895.1 21 CWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGVVSSSWPFFERLDA 112 7****************************************99999*****************************99999*********985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.9E-26 | 19 | 113 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MPDFHDSLTP PSRPVPVRED CWSEEASSTL VDAWGRRYLE LNRGNLRQKD WQDVADAVNA 60 LHGHTKKTHR TDVQCKNRID TIKKKYKIEK ARVSSSNGVV SSSWPFFERL DALIGPNFSA 120 KKSSSSPSPS PPVALPLLPH RKFHPSLPAI SVPPTAVALP QKRSIAAAMD NGYFRRNYSA 180 VAAAAAAAEA DEEEEEEEEE EVEEEEEVEV EVEEHEHEEE GRGSEVEEGD KEREGMKRLA 240 KAIEKFGEMY ERVEGQKLRQ MVDLEKQRMQ FAKDLEVQRM KMFMDTQVQL ERIKRGKRSG 300 SNDMYS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004485895.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 7e-81 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485895.1 | 0.0 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1S2XBY7 | 0.0 | A0A1S2XBY7_CICAR; trihelix transcription factor ASIL2-like | ||||
STRING | XP_004485895.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58630.1 | 3e-37 | sequence-specific DNA binding transcription factors |