PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004485860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 29495.1 Da PI: 6.3742 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8.1e-20 | 112 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd s+ k++r++lg+f taeeAa a+++a+++++g XP_004485860.1 112 HYRGVRRRP-WGKYAAEIRDSSK--KSARVWLGTFNTAEEAALAYDKAALRIRG 162 8********.**********422..45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 111 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.93E-31 | 111 | 171 | No hit | No description |
SuperFamily | SSF54171 | 4.12E-23 | 112 | 171 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.1E-15 | 112 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-36 | 112 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 112 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MENIHNSNNN HHATNSNEIL ESVWAKIINN DARTTNGNAI ECSNTWEELP NLQRLPSLGR 60 WISMGADFWE EILATSINKE DSCNYKNIEI GSVGIKSKKK VEECVRKEKA KHYRGVRRRP 120 WGKYAAEIRD SSKKSARVWL GTFNTAEEAA LAYDKAALRI RGSKACLNFP IEKVTNALRT 180 CGEKGLIDDV STIYDFGNRE SLLDSRKRGL RDRGEFVDVM NEEPAMKKIA GLEHMLENDD 240 DVFVFQDLGS DYLDSLLSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-29 | 109 | 171 | 2 | 64 | ATERF1 |
3gcc_A | 5e-29 | 109 | 171 | 2 | 64 | ATERF1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004485860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC199760 | 9e-80 | AC199760.2 Medicago truncatula chromosome 2 BAC clone mth2-104L7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485860.1 | 0.0 | ethylene-responsive transcription factor 1B | ||||
TrEMBL | A0A1S2XBV7 | 0.0 | A0A1S2XBV7_CICAR; ethylene-responsive transcription factor 1B | ||||
STRING | XP_004485860.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9547 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 1e-25 | ERF family protein |