PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004485845.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 710aa MW: 77763.1 Da PI: 6.7781 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.4e-24 | 152 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + XP_004485845.1 152 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySLQRP-SQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGAD 243 99****************************9966654.569************************************************..3489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_004485845.1 244 GELRLGIRRA 253 999****996 PP | |||||||
2 | Auxin_resp | 121.1 | 8.6e-40 | 278 | 359 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++++F+v+YnPr+s+seF+++v+k++k+l++++svGmRf+m+feted++err++G+++g+sd+dpvrWp+SkW++L XP_004485845.1 278 VVNALSKRCAFSVCYNPRVSSSEFIIPVNKFMKSLDCSYSVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWKCL 359 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.58E-42 | 145 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-39 | 147 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.68E-22 | 150 | 252 | No hit | No description |
PROSITE profile | PS50863 | 13.028 | 152 | 254 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-22 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-22 | 152 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.7E-34 | 279 | 359 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MGLIDLNTTE EDETPSSAIS SSSSSSHSGI STSASAMVPP QPSVCLELWH ACAGPLISLP 60 KKGSIVVYVP QGHFEQAQDF PVPACNIPPH VFCRVLDVKL HAEEGSDEVY CQVSLVPENQ 120 QAEQNIREGE IDADAEEEDT DALVKSTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP 180 LDYSLQRPSQ ELVAKDLHGL EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR 240 GADGELRLGI RRAVQLKSSG SFAAPSGLQL DPGSLMDVVN ALSKRCAFSV CYNPRVSSSE 300 FIIPVNKFMK SLDCSYSVGM RFRMRFETED AAERRFTGLI AGISDVDPVR WPGSKWKCLL 360 VRWDDIEASR HNRVSPWEIE PSGSASTSSN LMAASLKRSR IGFTSGKLEF PVPNGIGVSD 420 FGESLRFRKV LQGQEIMGVN TPYESINAQS PRLFELGRCY PGSNCSGIAA TGNIRMPQVT 480 SDFSSNGVGF GESFRFQKVL QGQEIFPCPP YGRAAFDEAR GNGCFGRYDG YQLLGSRNGW 540 PAQMHDNSSH LHASVTSGQV SSPSSVLMFQ QAVNPVSNSH FDNTNRYQEK DNKLRYQGSY 600 ISEAKNGMFT PSLPDKPIFS SGLAQEGTNP FGMHDFHNNN NINNQSNNSR LHDSVAIPRG 660 NQDMVSSCKT GCRLFGFSLT DDTNITNKEA AVASTITSQL NSGPSIQAMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-113 | 43 | 388 | 18 | 361 | Auxin response factor 1 |
4ldw_A | 1e-113 | 43 | 388 | 18 | 361 | Auxin response factor 1 |
4ldw_B | 1e-113 | 43 | 388 | 18 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004485845.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485845.1 | 0.0 | auxin response factor 3 isoform X2 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1S2X9U1 | 0.0 | A0A1S2X9U1_CICAR; Auxin response factor | ||||
STRING | XP_004485844.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |