PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004485801.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 283aa MW: 31493 Da PI: 8.3712

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004485801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.5e-38	44	104	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg r+nk+++ XP_004485801.1 44 QQGALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNKRTT 104 56689*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.1E-33	47	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.161	48	102	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-24	49	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MFSNCEKMVA ISSTTNQWPQ NEIDDGNNKV MEKQQGEEQI LIQQQGALKC PRCDSSNTKF 60 CYYNNYSLSQ PRHFCKACKR YWTRGGTLRN VPVGGGYRRN KRTTTTNTTL IKKPTTLIDA 120 TSISPMFYGL SSSNNNNPRP CDVNLIPLSR FNLSRVSNSG YDGFSTGFMS SETNGYNTSG 180 FNSVMPSVLS STTLQLQHKF MNDGLKYGSN NFQVGLDEEK KVEGQNSKFE WNNGVCQNQI 240 EHVGLYDDSI SNSSLYWNIG SSSGIGVWND QGANIASSLT SLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004485801.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146855	2e-65	AC146855.5 Medicago truncatula clone mth2-16c23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004485801.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	A0A1S2XCF7	0.0	A0A1S2XCF7_CICAR; dof zinc finger protein DOF1.4
STRING	XP_004485801.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	6e-31	Dof family protein