PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004485800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Dof | ||||||||
Protein Properties | Length: 305aa MW: 32135.2 Da PI: 9.2833 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120 | 8.7e-38 | 23 | 82 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ XP_004485800.1 23 QPPQKCPRCDSFNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVGGGCRKGKRAK 82 66789**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-26 | 10 | 80 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-32 | 25 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.863 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEQEGVDGRR GEMNKQVQIH PPQPPQKCPR CDSFNTKFCY YNNYSLSQPR YFCKSCRRYW 60 TQGGTLRNVP VGGGCRKGKR AKNSSSTSSG NSSLSQTPVL SSAQQQTMAL ALMTKDASFS 120 SALPFYQGGG GVGGVGYMSS FAGFNNNNQM NLPSSTHSNP FENVGGHSNL GLLQGFNVAA 180 AALGNSTQGQ NRPSQFFPMG MFTSEQQQGL NLIPPCSGSG SGVGVGALTH HENWTQSFMN 240 NNSGNNNRVN DPSLWSTIST TTSIGGANNS DRNLGGGSGG GASVGGSSSL APNQWPDLSG 300 FNPSQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004485800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485800.1 | 0.0 | dof zinc finger protein DOF5.3-like | ||||
TrEMBL | A0A1S2X9S5 | 0.0 | A0A1S2X9S5_CICAR; dof zinc finger protein DOF5.3-like | ||||
STRING | XP_004485800.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-34 | TARGET OF MONOPTEROS 6 |