PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004485768.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 280aa MW: 31426.7 Da PI: 8.5677

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004485768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.6	3.5e-35	45	103	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++a+kcprCdstntkfCyynny+ sqPr++C+aC+r+WtkGG+lrnvPvGggr++++ XP_004485768.1 45 QSEAVKCPRCDSTNTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGGRKNKRL 103 67899***********************************************9776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	46	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-31	48	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.99	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGLSSKQVSS NRDIDWNQTL LQDQNLELPK SLPMKKQQQQ QQTQQSEAVK CPRCDSTNTK 60 FCYYNNYNKS QPRHYCRACK RHWTKGGTLR NVPVGGGRKN KRLKKSTPPT SINTSTNTTI 120 NTTTKTSIST TPTTSNTNMD ADFNTNMTKI QTSHQKQNLS EFGIGNGMFL STSMPFTQNQ 180 SFLFPFSNST SFDTNTCAAV STSLKSSNNV YNYGEEFKTM EDSNINSVIP STSGGNITQP 240 WEMPATSNGM EMSNYWSWED IDSLVSTDLN VPWDDSDIKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004485768.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004485768.1	0.0	dof zinc finger protein DOF4.7-like
Refseq	XP_027187277.1	0.0	dof zinc finger protein DOF4.7-like
TrEMBL	A0A1S2X9Q9	0.0	A0A1S2X9Q9_CICAR; dof zinc finger protein DOF4.7-like
STRING	XP_004485768.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-28	Dof family protein