PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485711.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 889aa    MW: 98181.2 Da    PI: 7.4242
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485711.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18342441198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++
  XP_004485711.1 342 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGR 434
                     99**************************555566778***************9989999999***9.********************766.6666 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_004485711.1 435 LVMGFRK 441
                     6666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-20339445IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-31339449IPR015300DNA-binding pseudobarrel domain
CDDcd100178.32E-22340441No hitNo description
SMARTSM010193.0E-21342442IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152342443IPR003340B3 DNA binding domain
PfamPF023621.5E-15342441IPR003340B3 DNA binding domain
PROSITE profilePS5105013.708570620IPR011124Zinc finger, CW-type
PfamPF074961.7E-11575617IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MASAPSSSPS SSSSSKLCFN SDCKDFKSER PKKGWRLRTG DLAELCDRCG SAFEEGRFCD  60
LFHANASGWR NCETCRKRIH CGCIVSSHTF VLLDPGGIEC FTCARKNIIL PSNLPWSQSF  120
SLQNRLSERL RDLSAKNWSQ LAGSGPVPWK QAPSLFNPAS SSDLPPDGHS LVELSNNFDK  180
IYGNERLPAS SLEKKNEDLS GIPANWNVKL GSREMVLMNG MRNEDKSGPC FNMCQQPHSL  240
KEDSSSQPFG LSVTYSSPNE RNGQIGVTGI HPQPIPPHPG KQYSGTMHLA PDSSGEAHVR  300
NGRPRADARG RSQLLPRYWP RCTDLELQQI SIDSNSVITP LFQKTLSASD AGRIGRLVLP  360
KKCAETYFPP ISQPEGLPLK ILDAKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA  420
GDTVTFSRLE PEGRLVMGFR KSTSTMPSDQ DNETNKTGNG FSAHGEVELV DPSSWSKVDK  480
SGYIAKEALG SKSLISRKRK NNILGSKSKR LKLDNEDIIE LKITWQEAQG LLRPPPNHVP  540
SIVVIEGFEF EEYEDAPVLG KPTIFTSDNM GERIQWAQCE DCLKWRKLPA CALLPSKWTC  600
SDNLWDPERS SCSAAQELTA EQLENLLPPC NSAVSKKMKA AKLDPDNADA LEGLDTLANL  660
AILGEGEALP TSSQATTKHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV CLTVKRRFRT  720
LMLRREKKQS EREAETTRKK QQQQHSQQLP SSEILLDDDS LHNSNTGDSS PNQNKEGNDG  780
SDDDPHRIKS SVSPFKGQID LNIQPEREEE LSPGSDSGGV MKLLHDATEM YIKQQQNVLN  840
SSTGDSSGSQ SQQVADGVRE EKLSNGVITH GSSSHNANKE HDQSLSMNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C9e-613204451126B3 domain-containing transcription repressor VAL1
5yzz_C9e-613204451126B3 domain-containing transcription repressor VAL1
5z00_C9e-613204451126B3 domain-containing transcription repressor VAL1
5z00_G9e-613204451126B3 domain-containing transcription repressor VAL1
5z00_K9e-613204451126B3 domain-containing transcription repressor VAL1
5z00_M9e-613204451126B3 domain-containing transcription repressor VAL1
6j9a_A8e-613204452127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1497511KRKNNILGSKSKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485711.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485711.10.0B3 domain-containing protein Os07g0563300-like
RefseqXP_027185993.10.0B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1S2X9M80.0A0A1S2X9M8_CICAR; B3 domain-containing protein Os07g0563300-like
STRINGXP_004485711.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-161HSI2-like 1