PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004485696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 40850.1 Da PI: 6.4402 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++l+++++++G g+W+t ++ g+ R++k+c++rw +yl XP_004485696.1 15 KGPWTTEEDQKLIHYIHKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_004485696.1 68 RGRFSFEEEETIIQLHSILGNK-WSAIASRLP-GRTDNEIKNYWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.142 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-12 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.292 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-12 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGRTPCCDKN NGLKKGPWTT EEDQKLIHYI HKHGYGNWRT LPKNAGLQRC GKSCRLRWTN 60 YLRPDIKRGR FSFEEEETII QLHSILGNKW SAIASRLPGR TDNEIKNYWN THIRKRLLRM 120 GIDPVTHSPR LDLLDLSSIL YAYGNSSSHI NNIQTLLGIQ QPLVNPELLK LASSLFNSSQ 180 QQDYSNNQPC NPQIQSQVPR FVQFQDQLVP QVHANANACA TFTNPSLPNQ SHNMFEPNVE 240 AYTSNFTDLS YNEQHSVHDW HENGFGLIST IAEDEYIPQL LSSYNNNNNN NYGCDNIQNL 300 MYQTSDNSNQ FLSTPSSSPT PLNSNSTEDE RESYDSCNRL NFQMSADHVS DANDQFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004485696.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031202 | 1e-135 | KT031202.1 Glycine max clone HN_CCL_70 MYB/HD-like transcription factor (Glyma13g32090.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485696.1 | 0.0 | transcription factor MYB41 | ||||
Swissprot | Q9LDR8 | 1e-104 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A1S2X9L5 | 0.0 | A0A1S2X9L5_CICAR; transcription factor MYB41 | ||||
STRING | XP_004485696.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF850 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-105 | MYB-like 102 |
Publications ? help Back to Top | |||
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