PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004485676.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 471aa MW: 52185.9 Da PI: 4.9685

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004485676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.4	1.6e-05	361	398	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_004485676.1 361 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 398 66778899999**9998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.134	349	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-9	359	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-12	359	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.52E-5	361	402	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAEEYQAGIC GETWWNINNS TRGVFPLMMN SSSTCSIAAN DGGNYSTWQN EFFGLKETTT 60 TTKSCSIEET NTNFDVSDGS FCFLDTHKPQ QSESANLIDS TLQIMDFGLS SPTSSNWNHS 120 LFGTGRPENN FHSVLEEETM IESSNNSQIQ KEWNTKNMIS STSGIRQVST LDAFKPMDQE 180 FSLDEQSGLS CGFPIETSNS YDYPSTLIQS LFDPQTQPQP QTHNSLFTNP CISYSSSANY 240 GTSSNEVSSP TWSKISSLMK PSMPKQQLSG LQFSNNTPFW NASAEALNDI RAGVLASSQA 300 QYQSPNFEDK RLNCPITLLN KLKREESPER TKKNSSEGAV KRARIETPSP LPTFKVCGQV 360 RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVNVLSAPYM KNGSPIQHHQ 420 GCDNVKESEG KKQDLRSQGL CLVPIASTFP VTNETIVDFW TPSFGGPLFG R

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAEEYQAGIC GETWWNINNS TRGVFPLMMN SSSTCSIAAN DGGNYSTWQN EFFGLKETTT  60
TTKSCSIEET NTNFDVSDGS FCFLDTHKPQ QSESANLIDS TLQIMDFGLS SPTSSNWNHS  120
LFGTGRPENN FHSVLEEETM IESSNNSQIQ KEWNTKNMIS STSGIRQVST LDAFKPMDQE  180
FSLDEQSGLS CGFPIETSNS YDYPSTLIQS LFDPQTQPQP QTHNSLFTNP CISYSSSANY  240
GTSSNEVSSP TWSKISSLMK PSMPKQQLSG LQFSNNTPFW NASAEALNDI RAGVLASSQA  300
QYQSPNFEDK RLNCPITLLN KLKREESPER TKKNSSEGAV KRARIETPSP LPTFKVCGQV  360
RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVNVLSAPYM KNGSPIQHHQ  420
GCDNVKESEG KKQDLRSQGL CLVPIASTFP VTNETIVDFW TPSFGGPLFG R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004485676.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004485676.1	0.0	transcription factor bHLH112-like isoform X1
TrEMBL	A0A1S2XBH6	0.0	A0A1S2XBH6_CICAR; transcription factor bHLH112-like isoform X1
STRING	XP_004485676.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	9e-54	bHLH family protein