PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485645.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 341aa    MW: 38530.9 Da    PI: 8.0788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12166211555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k++q
  XP_004485645.1 166 HIVAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQMQ 211
                     8899**********************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.529161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-17165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.82E-12166214No hitNo description
SuperFamilySSF474591.96E-16166232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9166211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-14167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSSHMEISSI RGLPELGIME DPNFLHQWNH HISSIDTFGD ALQKHPNFNT KTSMETLLAA  60
GSERPMKQLK NNSWNYNNSP QTSDTHQYDN SCCNLVSFVD SNYTSNQLGL LKPKSEMVCP  120
KIDNATLANM LINQGNLGNQ NHVFKAFQKA KDVDTRPNKL SQAHDHIVAE RKRREKLSQR  180
FIALSALVPG LKKMDKASVL GDAIKYLKQM QEKVNVLEEE QKRKKTVESV VIVKKSQLSN  240
DGEDSCSDTD NSTFDETLPE IEARFCERNV LIRLHCLKSQ GVIEKTISEI EKLNLKVNNS  300
SALTFGNFTL DITIIAQMDV GFCMTLKDVV RKLRSAYSSF M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14165214857Transcription factor MYC2
5gnj_B6e-14165214857Transcription factor MYC2
5gnj_E6e-14165214857Transcription factor MYC2
5gnj_F6e-14165214857Transcription factor MYC2
5gnj_G6e-14165214857Transcription factor MYC2
5gnj_I6e-14165214857Transcription factor MYC2
5gnj_M6e-14165214857Transcription factor MYC2
5gnj_N6e-14165214857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485645.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485645.10.0transcription factor bHLH19-like
SwissprotQ9T0721e-58BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S2X9J10.0A0A1S2X9J1_CICAR; transcription factor bHLH19-like
STRINGXP_004485645.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-61bHLH family protein