PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485591.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 792aa    MW: 88033.1 Da    PI: 5.0932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014343366123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C++C+++F  k+ + +H+ + H
  XP_004485591.1 343 FECHKCSMTFDEKDAYLQHLLSiH 366
                     89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.99210282IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.41E-7216265IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.101.9E-4219264IPR001739Methyl-CpG DNA binding
PROSITE profilePS501578.974343371IPR007087Zinc finger, C2H2
SMARTSM003550.027343366IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280345366IPR007087Zinc finger, C2H2
SMARTSM003550.37390412IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642390417IPR007087Zinc finger, C2H2
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MKDEEEQKST VKMDLLSFID STTLSQSELH ALSLSSLTTF DLTSTRQTVT PKIDPSIFNH  60
SSGSYRQTYS RPRRRCRVAP LLPTPSLPSD HRVIVDYLKQ FIREDPKFDQ VELLQPTITS  120
PPVIFAGGER KRKRGRKPKV KVHLDECYRG MEIVNKNGVV IDLAALSNAE DLFAGELARR  180
TEGLSGEEEL LGFLSDLVGQ WGSRRRKRRI VDAADFGDVL PLGWKLLLSL KRKDGRAWIY  240
CRRYISPRGQ QFVSCKEVSS YLQSLFGQPD LQLQISHRSE NVLQEQRVTA ENSAGVIREE  300
QDQRQIVATN SDVSGLSVSN ERLKEIALLE MENLADVQIH DLFECHKCSM TFDEKDAYLQ  360
HLLSIHQRTT RRYRLGSSVG DGVIMKDGKF ECQFCHKVFL ERRRYNGHVG IHVRNYVRKA  420
EDLPGQPNVL RQDKSPVREE MPSRISKMDA LIEIAQNSIM EDSVMEPYCS SKLNTIPVSD  480
IAGGDLDEEL NVESPINEWQ MEENSIGKND SPSLPMDGTV EEIDEDNQVV DAKMFSFLDN  540
TCLLSVNKQN VDAPDTSNGQ CDVALTVEGF DHSGIDLRGV SQSPLLPLSG NHMIPGSEKS  600
ESSGRTYTKG HLKLDGDNSN KSGLKIGLDG CKDVPVVANV QVTAMPASKE NVVQSRVCNF  660
SVSPEQSLDS FSAFSSDKGF QELRLEDIGS LEYDFASVQG SLDVSTDLAH SIVVQGTCAS  720
SAQSALQEVM LNVDERNQLT TVCVWCGIEF NHDAVNSELQ SDSVGFMCPA CKAKISGQIN  780
VLDSGSPNAG HI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128137ERKRKRGRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1691240.0AC169124.2 Medicago truncatula chromosome 2 BAC clone mte1-34m3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485591.10.0uncharacterized protein LOC101489448
RefseqXP_004485592.10.0uncharacterized protein LOC101489448
TrEMBLA0A1S2X9F90.0A0A1S2X9F9_CICAR; uncharacterized protein LOC101489448
STRINGXP_004485590.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719