PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485583.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CAMTA
Protein Properties Length: 1019aa    MW: 114857 Da    PI: 5.8073
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.54.1e-56181324118
            CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                      ++rwl++ ei++iL n++ +++t+e++ rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+
  XP_004485583.1  18 AQHRWLRPAEICEILCNYRMFHITSEPHIRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRS 112
                     49********************************************************************************************* PP

            CG-1  99 ywlLeeelekivlvhylevk 118
                     yw+L+ e+ +iv+vhylevk
  XP_004485583.1 113 YWMLDPEMMHIVFVHYLEVK 132
                     *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.84711137IPR005559CG-1 DNA-binding domain
SMARTSM010767.2E-8014132IPR005559CG-1 DNA-binding domain
PfamPF038593.6E-5017131IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.52E-17434519IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.104.9E-5434508IPR013783Immunoglobulin-like fold
PfamPF018334.0E-7434510IPR002909IPT domain
PROSITE profilePS5029720.394605738IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.75E-20610728IPR020683Ankyrin repeat-containing domain
PfamPF127969.4E-9616695IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.3E-20618729IPR020683Ankyrin repeat-containing domain
CDDcd002045.07E-16623726No hitNo description
SMARTSM002483600634663IPR002110Ankyrin repeat
PROSITE profilePS500888.63634666IPR002110Ankyrin repeat
PROSITE profilePS5008810.606667699IPR002110Ankyrin repeat
SMARTSM002483.5E-4667696IPR002110Ankyrin repeat
SMARTSM002481300706735IPR002110Ankyrin repeat
SuperFamilySSF525401.65E-7838893IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.15842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712844872IPR000048IQ motif, EF-hand binding site
PfamPF006120.004846863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0024865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432866890IPR000048IQ motif, EF-hand binding site
PfamPF006125.3E-5868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
MAEPPSYGLD MQQLQFEAQH RWLRPAEICE ILCNYRMFHI TSEPHIRPPS GSLFLFDRKV  60
LRYFRKDGHN WRKKKDGKTV KEAHEKLKVG SVDVLHCYYA HGEENENFQR RSYWMLDPEM  120
MHIVFVHYLE VKGNKSNIGG NSDCSVPSLS TDPMSPTSSL ASLREDADSG DHGQSSVSGT  180
DYIPLVDMDK YRGNDATCID GLKAHDMASW DTVLQSTGEL HADPSLVSFP SIPSSSLANI  240
LDQEQNIFGD FSMSRSDLTI GAGSSQPLQS NWQIPFEDNT GHMPSLTQSL SLEFGSDYGT  300
GLLGNEAQNE SSEIDPVMFS FHGEPKEKLA QQNYLEKKVE GHLQDELKSN CANEVHIEET  360
INYPLSVRRT LLDSNESLKK VDSFSRWITK ALGEVDNLNM QSSPGISWST DECGHVIDDT  420
SLSPSLSQDQ LYSINDFSPK WAYAGSDTEV LIIGSFLKSQ PEVTTYNWSC MFGEVEVPAE  480
VVANGILCCQ APPHKVGRVP FYVTCSNRLA CSEVREFDFR EGYSSNVDYT DFFNSSNDML  540
LHLRLDKFLS LKPVHPSNQA FEGDMEKINL IFKLISLREE EDYSSKEEKT VEMNISRHKV  600
KEHQFHRQFK ENLYSWLLHK VTESGKGPNV LDKDGQGVLH LAAVLGYYWA ITPILIAGVN  660
VNFRDVNGWT ALHWAASCGR ERTVAVLVSM GADCGALTDP SPEFPSGRTA ADLASSNGHK  720
GISGFLAESS LTSHLESLTV DDKQKGGQQE ISGTKAVQTV SERTATPVVY NDMPDGLCLK  780
DSLTAVRNAT QAADRIHQVF RMQSFQRKQL TQYEDDEFGL SDQRALSLLA SKVCKSGQRD  840
GLVNVAATQI QKKFRGWKKR KEFLIIRERI VKIQAHVRGH QVRKQYKTII WSVGILEKVI  900
LRWRRKGSGL RGFRPDTLNK APSQQSDSLK EDDYDYLKEG RKQKEEKIEK ALSRVKSMVQ  960
YPEARAQYRR VLNVVEDFRQ KKDSNMGLIS SEETVDGVED LIDIDMLLDD DNFIPIAFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hry_A9e-1261172846157ank3C2_1
5hry_B9e-1261172846157ank3C2_1
5hry_C9e-1261172846157ank3C2_1
5hry_D9e-1261172846157ank3C2_1
5hry_E9e-1261172846157ank3C2_1
5hry_F9e-1261172846157ank3C2_1
5hry_G9e-1261172846157ank3C2_1
5hry_H9e-1261172846157ank3C2_1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485583.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1874650.0AC187465.3 Medicago truncatula chromosome 2 BAC clone mth2-69g14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485583.10.0calmodulin-binding transcription activator 2-like isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1S2X9F50.0A0A1S2X9F5_CICAR; calmodulin-binding transcription activator 2-like isoform X2
STRINGXP_004485582.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]