PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485582.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CAMTA
Protein Properties Length: 1023aa    MW: 115281 Da    PI: 5.8722
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.54.1e-56221364118
            CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                      ++rwl++ ei++iL n++ +++t+e++ rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+
  XP_004485582.1  22 AQHRWLRPAEICEILCNYRMFHITSEPHIRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRS 116
                     49********************************************************************************************* PP

            CG-1  99 ywlLeeelekivlvhylevk 118
                     yw+L+ e+ +iv+vhylevk
  XP_004485582.1 117 YWMLDPEMMHIVFVHYLEVK 136
                     *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.84715141IPR005559CG-1 DNA-binding domain
SMARTSM010767.2E-8018136IPR005559CG-1 DNA-binding domain
PfamPF038593.6E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.0E-5438512IPR013783Immunoglobulin-like fold
PfamPF018334.0E-7438514IPR002909IPT domain
SuperFamilySSF812962.52E-17438523IPR014756Immunoglobulin E-set
PROSITE profilePS5029720.394609742IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.75E-20614732IPR020683Ankyrin repeat-containing domain
PfamPF127969.4E-9620699IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.3E-20622733IPR020683Ankyrin repeat-containing domain
CDDcd002045.10E-16627730No hitNo description
PROSITE profilePS500888.63638670IPR002110Ankyrin repeat
SMARTSM002483600638667IPR002110Ankyrin repeat
SMARTSM002483.5E-4671700IPR002110Ankyrin repeat
PROSITE profilePS5008810.606671703IPR002110Ankyrin repeat
SMARTSM002481300710739IPR002110Ankyrin repeat
SuperFamilySSF525401.65E-7842897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.15846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712848876IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041850867IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0024869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432870894IPR000048IQ motif, EF-hand binding site
PfamPF006125.3E-5872891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MAEPPSYGLG PRLDMQQLQF EAQHRWLRPA EICEILCNYR MFHITSEPHI RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML  120
DPEMMHIVFV HYLEVKGNKS NIGGNSDCSV PSLSTDPMSP TSSLASLRED ADSGDHGQSS  180
VSGTDYIPLV DMDKYRGNDA TCIDGLKAHD MASWDTVLQS TGELHADPSL VSFPSIPSSS  240
LANILDQEQN IFGDFSMSRS DLTIGAGSSQ PLQSNWQIPF EDNTGHMPSL TQSLSLEFGS  300
DYGTGLLGNE AQNESSEIDP VMFSFHGEPK EKLAQQNYLE KKVEGHLQDE LKSNCANEVH  360
IEETINYPLS VRRTLLDSNE SLKKVDSFSR WITKALGEVD NLNMQSSPGI SWSTDECGHV  420
IDDTSLSPSL SQDQLYSIND FSPKWAYAGS DTEVLIIGSF LKSQPEVTTY NWSCMFGEVE  480
VPAEVVANGI LCCQAPPHKV GRVPFYVTCS NRLACSEVRE FDFREGYSSN VDYTDFFNSS  540
NDMLLHLRLD KFLSLKPVHP SNQAFEGDME KINLIFKLIS LREEEDYSSK EEKTVEMNIS  600
RHKVKEHQFH RQFKENLYSW LLHKVTESGK GPNVLDKDGQ GVLHLAAVLG YYWAITPILI  660
AGVNVNFRDV NGWTALHWAA SCGRERTVAV LVSMGADCGA LTDPSPEFPS GRTAADLASS  720
NGHKGISGFL AESSLTSHLE SLTVDDKQKG GQQEISGTKA VQTVSERTAT PVVYNDMPDG  780
LCLKDSLTAV RNATQAADRI HQVFRMQSFQ RKQLTQYEDD EFGLSDQRAL SLLASKVCKS  840
GQRDGLVNVA ATQIQKKFRG WKKRKEFLII RERIVKIQAH VRGHQVRKQY KTIIWSVGIL  900
EKVILRWRRK GSGLRGFRPD TLNKAPSQQS DSLKEDDYDY LKEGRKQKEE KIEKALSRVK  960
SMVQYPEARA QYRRVLNVVE DFRQKKDSNM GLISSEETVD GVEDLIDIDM LLDDDNFIPI  1020
AFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hry_A9e-1261573246157ank3C2_1
5hry_B9e-1261573246157ank3C2_1
5hry_C9e-1261573246157ank3C2_1
5hry_D9e-1261573246157ank3C2_1
5hry_E9e-1261573246157ank3C2_1
5hry_F9e-1261573246157ank3C2_1
5hry_G9e-1261573246157ank3C2_1
5hry_H9e-1261573246157ank3C2_1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485582.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1874650.0AC187465.3 Medicago truncatula chromosome 2 BAC clone mth2-69g14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485582.10.0calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1S2X9F70.0A0A1S2X9F7_CICAR; calmodulin-binding transcription activator 2-like isoform X1
STRINGXP_004485582.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]