PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485417.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 670aa    MW: 74895.2 Da    PI: 6.0066
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.25.6e-22124224198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_004485417.1 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELIATDLHGHEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 214
                     99****************************975444444..8************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_004485417.1 215 NGELRVGVRR 224
                     999*****97 PP
2Auxin_resp111.86.6e-37250332183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv+d ++  W +S+WrsLk
  XP_004485417.1 250 ASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSPVWADSEWRSLK 332
                     789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.54E-44113253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-41120239IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-21122224No hitNo description
PROSITE profilePS5086311.124124226IPR003340B3 DNA binding domain
PfamPF023621.1E-19124224IPR003340B3 DNA binding domain
SMARTSM010191.6E-20124226IPR003340B3 DNA binding domain
PfamPF065072.3E-35250332IPR010525Auxin response factor
PfamPF023091.2E-10543636IPR033389AUX/IAA domain
PROSITE profilePS5174525.719546639IPR000270PB1 domain
SuperFamilySSF542772.26E-10548623No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MASHHISATS RAGATNDAIY KELWHACAGP LVTLPREGER VYYFPQGHME QLEASMNQAL  60
EQQMPSFNLP SKILCKVVNI HLQAEPETDE VYAQITLLPE TDQSEVTSPD DPLPEPPRCT  120
VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMTQQPP WQELIATDLH GHEWHFRHIF  180
RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENGELRV GVRRLMRQQS NMPSSVISSH  240
SMHLGVLATA SHAISTGTLF SVFYKPRTSR SEFIVSVNKY LEARNHKLSV GMRFKMRFEG  300
DEVPERRFSG TIVGVEDNKS PVWADSEWRS LKVQWDEPSS ILRPDRVSPW ELEPLVSTPP  360
ANSQPTQRNK RSRPPVLPST MPDSSPQGIW KSPVESPPFP YRDLQHGRDL YPSPRFSSTA  420
TSFLGFGGNG PASNKSIYWS SRMENSTESF SPVALKESGE KRQGTGNGCR LFGIQLLENS  480
NAEESLQTVP LSGMVGDDRS VPSLDAESDQ HSEPSNVNRS DIPSVSCDAD KSCLRSPQES  540
QSRQIRSCTK VHMQGMAVGR AVDLTRFDGY EDLLRKFEEM FDIEGELCGA TKKWQVVYTD  600
NEDDMMMVGD DPWLEFCSVV RKIFIYTAEE VKKLSPKIGI LINEEGKPSK QDSEAIVNPE  660
DQSSIVGPGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013571357Auxin response factor 1
4ldw_A0.013571357Auxin response factor 1
4ldw_B0.013571357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485417.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405510.0AC140551.8 Medicago truncatula clone mth2-80i8, complete sequence.
GenBankAC1480970.0AC148097.7 Medicago truncatula clone mth2-15a20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485416.10.0auxin response factor 1
RefseqXP_004485417.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A1S2XBJ70.0A0A1S2XBJ7_CICAR; Auxin response factor
STRINGXP_004485416.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]