PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004485416.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 670aa MW: 74895.2 Da PI: 6.0066 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.2 | 5.6e-22 | 124 | 224 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ ++++ + +l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + XP_004485416.1 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELIATDLHGHEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 214 99****************************975444444..8************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_004485416.1 215 NGELRVGVRR 224 999*****97 PP | |||||||
2 | Auxin_resp | 111.8 | 6.6e-37 | 250 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv+d ++ W +S+WrsLk XP_004485416.1 250 ASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSPVWADSEWRSLK 332 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.54E-44 | 113 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-41 | 120 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.37E-21 | 122 | 224 | No hit | No description |
PROSITE profile | PS50863 | 11.124 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-19 | 124 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-20 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-35 | 250 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-10 | 543 | 636 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.719 | 546 | 639 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.26E-10 | 548 | 623 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 670 aa Download sequence Send to blast |
MASHHISATS RAGATNDAIY KELWHACAGP LVTLPREGER VYYFPQGHME QLEASMNQAL 60 EQQMPSFNLP SKILCKVVNI HLQAEPETDE VYAQITLLPE TDQSEVTSPD DPLPEPPRCT 120 VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMTQQPP WQELIATDLH GHEWHFRHIF 180 RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENGELRV GVRRLMRQQS NMPSSVISSH 240 SMHLGVLATA SHAISTGTLF SVFYKPRTSR SEFIVSVNKY LEARNHKLSV GMRFKMRFEG 300 DEVPERRFSG TIVGVEDNKS PVWADSEWRS LKVQWDEPSS ILRPDRVSPW ELEPLVSTPP 360 ANSQPTQRNK RSRPPVLPST MPDSSPQGIW KSPVESPPFP YRDLQHGRDL YPSPRFSSTA 420 TSFLGFGGNG PASNKSIYWS SRMENSTESF SPVALKESGE KRQGTGNGCR LFGIQLLENS 480 NAEESLQTVP LSGMVGDDRS VPSLDAESDQ HSEPSNVNRS DIPSVSCDAD KSCLRSPQES 540 QSRQIRSCTK VHMQGMAVGR AVDLTRFDGY EDLLRKFEEM FDIEGELCGA TKKWQVVYTD 600 NEDDMMMVGD DPWLEFCSVV RKIFIYTAEE VKKLSPKIGI LINEEGKPSK QDSEAIVNPE 660 DQSSIVGPGC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 1 | 357 | 1 | 357 | Auxin response factor 1 |
4ldw_A | 0.0 | 1 | 357 | 1 | 357 | Auxin response factor 1 |
4ldw_B | 0.0 | 1 | 357 | 1 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004485416.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC140551 | 0.0 | AC140551.8 Medicago truncatula clone mth2-80i8, complete sequence. | |||
GenBank | AC148097 | 0.0 | AC148097.7 Medicago truncatula clone mth2-15a20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485416.1 | 0.0 | auxin response factor 1 | ||||
Refseq | XP_004485417.1 | 0.0 | auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A1S2XBJ7 | 0.0 | A0A1S2XBJ7_CICAR; Auxin response factor | ||||
STRING | XP_004485416.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6802 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G59750.2 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|