PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001265993.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 280aa    MW: 30346.5 Da    PI: 8.1694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001265993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012103125123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k F++   L  H  +H
  NP_001265993.1 103 HRCTVCNKAFPSYQALGGHKASH 125
                     79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.019103125IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-13103127IPR007087Zinc finger, C2H2
SuperFamilySSF576671.9E-8103174No hitNo description
PROSITE profilePS501579.016103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SMARTSM003550.36152174IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-12152176IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827152174IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MALELEAFNS SPPTNSPFPT FNKEEIRESE SLVKRKRSKR PRISNPPTEE EYLALCLIML  60
AQSGNNRNNK NDIVSHFHNQ IESSSSQSQQ QPSPPSPPVK LNHRCTVCNK AFPSYQALGG  120
HKASHRKSSL ETPSTAFNDT VSVSTVTAGK MHECSICHKS FSTGQALGGH KRCHYEGGIN  180
HNNNNNNNSN SNVNANNSSG ITISEGAAAS SSVSHRGFDL NLPAPLTEFW SPVGFGGGDS  240
KKKSVNVNVA GIGEQEVESP LPVTAKRPRV FLVEHDDETV
Function -- GeneRIF ? help Back to Top
  1. Data suggest that AP2-family transcription factor CAP2 activates CaZF promoter by interacting with C-repeat elements in CaZF promoter: [CaZF]
    [PMID: 23418595]
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001265993.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5132980.0EU513298.1 Cicer arietinum zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001265993.10.0zinc finger protein ZAT10-like
TrEMBLC0ITH80.0C0ITH8_CICAR; Zinc finger protein
STRINGXP_004496881.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-38salt tolerance zinc finger
Publications ? help Back to Top
  1. Jain D,Roy N,Chattopadhyay D
    CaZF, a plant transcription factor functions through and parallel to HOG and calcineurin pathways in Saccharomyces cerevisiae to provide osmotolerance.
    PLoS ONE, 2009. 4(4): p. e5154
    [PMID:19365545]
  2. Jain D,Chattopadhyay D
    Promoter of CaZF, a chickpea gene that positively regulates growth and stress tolerance, is activated by an AP2-family transcription factor CAP2.
    PLoS ONE, 2013. 8(2): p. e56737
    [PMID:23418595]