PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g22480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 159aa MW: 17607.4 Da PI: 7.8407 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141 | 3.7e-44 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dCv++pyfp+++p+kfa vhk+FGasnv k+l++lpe +r da+ss+vyeA+ar++dP+yG+vg+i++lq+q+e l+++la +++ CA12g22480 14 PCAACKLLRRRCTQDCVFSPYFPSDEPHKFASVHKVFGASNVNKMLQELPEYQRGDAVSSMVYEANARMKDPIYGCVGTISSLQHQIEFLQKQLAIAQA 112 7**********************************************************************************************9998 PP DUF260 100 e 100 e CA12g22480 113 E 113 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.861 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-44 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MKESGGRKQG ATSPCAACKL LRRRCTQDCV FSPYFPSDEP HKFASVHKVF GASNVNKMLQ 60 ELPEYQRGDA VSSMVYEANA RMKDPIYGCV GTISSLQHQI EFLQKQLAIA QAEIVHMKMQ 120 QPSSMYRGGG GTXXXXXXXP PIHMQSEAHS EFEACDFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-48 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-48 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 9e-82 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552419.1 | 1e-108 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 5e-62 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2G2YBE6 | 1e-108 | A0A2G2YBE6_CAPAN; LOB domain-containing protein 4 | ||||
STRING | Solyc12g100150.1.1 | 5e-88 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-64 | LOB domain-containing protein 4 |