PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g21800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 52563.4 Da PI: 6.5729 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 468.3 | 4.2e-143 | 49 | 467 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl+cA +v+sg+le+a+ L ++s+lasp+gd+mqR+a+yf eALa r++rs+++l+kal++++ s +see+ ++k+f+e++P+lk++++++N CA12g21800 49 LIHLLLACASHVASGSLENANISLDHISQLASPSGDTMQRIASYFNEALADRILRSWPGLFKALRSTKLS--VVSEEILVRKMFFEIFPFLKVAFVVTN 145 689*************************************************************999998..6************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTgv++ +ke l ++++ L++ Ae+l++pf+fn v+++le+l++e+Lrvk+ CA12g21800 146 QAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAHVLTQEAEKLDIPFQFNQ-VVSTLESLDVEKLRVKT 239 **************************************************....9**************************.79*************** PP GRAS 199 gEalaVnlvlqlhrll......................................................desvsles..erdevLklvkslsPkvvvv 241 gEala+++++qlh+ll ++ + d++L+++++lsPkv+vv CA12g21800 240 GEALAISSIMQLHTLLahdnekksplplkhkngvtlpralinqntfgeflekdmangcspsndtasssplCST----GssKMDSFLNALWGLSPKVMVV 334 *************************************************************999875443333....2346799*************** PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +eq+++hn+++++er++e+l++y+alfd+le++lpr+s erikvE++llg+ei+++vaceg er+erhe+lekW +r+++aGF++vpls++a+ qa++l CA12g21800 335 TEQDSNHNATTLMERLSESLHFYAALFDCLESTLPRTSLERIKVEKMLLGEEIKSIVACEGIERKERHEKLEKWFQRFDTAGFGNVPLSYYAMLQARRL 433 *************************************************************************************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+ ++ +gy+++e +g++v++W+dr+L+svS+Wr CA12g21800 434 LQSYSCEGYKIKEVNGCVVICWQDRALFSVSSWR 467 *********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.705 | 23 | 447 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-140 | 49 | 467 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MLQDDGSSSV TSSSPLQVFP VMSLSPGLGF GSSNQWLKEL KSEERGLYLI HLLLACASHV 60 ASGSLENANI SLDHISQLAS PSGDTMQRIA SYFNEALADR ILRSWPGLFK ALRSTKLSVV 120 SEEILVRKMF FEIFPFLKVA FVVTNQAIIE AMEGEKMVHI VDLNAAEPLQ WRALLQDLSA 180 RPEGPPHLRI TGVHQQKEVL DQMAHVLTQE AEKLDIPFQF NQVVSTLESL DVEKLRVKTG 240 EALAISSIMQ LHTLLAHDNE KKSPLPLKHK NGVTLPRALI NQNTFGEFLE KDMANGCSPS 300 NDTASSSPLC STGSSKMDSF LNALWGLSPK VMVVTEQDSN HNATTLMERL SESLHFYAAL 360 FDCLESTLPR TSLERIKVEK MLLGEEIKSI VACEGIERKE RHEKLEKWFQ RFDTAGFGNV 420 PLSYYAMLQA RRLLQSYSCE GYKIKEVNGC VVICWQDRAL FSVSSWRCRK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-38 | 31 | 469 | 1 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552026.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2G2YB40 | 0.0 | A0A2G2YB40_CAPAN; Scarecrow-like protein 3 | ||||
STRING | PGSC0003DMT400011839 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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