PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g21330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GATA | ||||||||
Protein Properties | Length: 153aa MW: 16549.8 Da PI: 10.6583 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.7e-19 | 20 | 54 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ CA12g21330 20 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 54 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.5E-14 | 14 | 64 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.716 | 14 | 50 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-13 | 17 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-15 | 18 | 54 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.32E-12 | 19 | 54 | No hit | No description |
Pfam | PF00320 | 4.0E-17 | 20 | 54 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 20 | 45 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSGQSKTPER VSLETSQKTC ADCGTTKTPL WRGGPAGPKS LCNACGIRSR KKRRALLGLN 60 KEDKKAKKSS NKSIDNHPRH HQNQSSNSSS TSSSGESTTS KAVVEMNECI PFKKRALHFG 120 RPKLNSTHTR KLSEEEQAAF LLMALSCGSV YA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016551662.1 | 1e-109 | PREDICTED: GATA transcription factor 17-like | ||||
Refseq | XP_016551663.1 | 1e-109 | PREDICTED: GATA transcription factor 17-like | ||||
Swissprot | Q9LIB5 | 5e-30 | GAT17_ARATH; GATA transcription factor 17 | ||||
TrEMBL | A0A1U8EWY1 | 1e-108 | A0A1U8EWY1_CAPAN; GATA transcription factor 23 | ||||
TrEMBL | A0A2G2YB93 | 1e-108 | A0A2G2YB93_CAPAN; GATA transcription factor 17-like | ||||
STRING | Solyc12g099370.1.1 | 2e-62 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16870.1 | 4e-26 | GATA transcription factor 17 |
Publications ? help Back to Top | |||
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