PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g21310

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CAMTA

Protein Properties

Length: 786aa MW: 88879.1 Da PI: 6.4096

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g21310	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	50.1	5.1e-16	41	84	74	117
CG-1 74 KvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 +vg+ e +++yYah+e+ +tf rrcywlL+++le++vlvhy+e+ CA12g21310 41 QVGNEEWIHVYYAHGEDSSTFVRRCYWLLDKTLEHVVLVHYRET 84 699**************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	23.728	1	90	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.5E-5	3	85	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.6E-13	41	83	IPR005559	CG-1 DNA-binding domain
CDD	cd00204	5.72E-12	389	508	No hit	No description
SuperFamily	SSF48403	2.49E-13	418	513	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.973	440	520	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-12	440	512	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	12.209	449	481	IPR002110	Ankyrin repeat
SMART	SM00248	1.5E-6	449	478	IPR002110	Ankyrin repeat
Pfam	PF00023	4.8E-5	449	480	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.25E-8	595	662	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	14	611	633	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.236	612	641	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.086	614	632	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	1.7	634	656	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.59	635	659	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.057	636	656	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	270	712	734	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.126	713	742	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MKSPSAWTCE LVIFGYSQHN GGIEDEVAPT KRDSCNTLQP QVGNEEWIHV YYAHGEDSST 60 FVRRCYWLLD KTLEHVVLVH YRETIAGFSN NKAAPVSSGS ALSGPADMSA SWDLSGQPDS 120 AVDQQYSVSQ HAHLEPNSDM TVQNHEQRLL EINTLEWDDL LAPGDSNMII STQQAGGRTV 180 SVQHTSYEQH NLCELNGYRL NGVSSSLERM STVNNGNEVT FQTADGQMTS SFQENESGVM 240 TDSFGRWMSY LITDPPGSPD DPTPESSAST EILQPVVYRC VVSPQTPGLV NIYLSFDGNK 300 PISQIMSFEF RAPSVHLSTE PPENKSNWDE LALQMRLAHL LFSTSKSLNI LSSKIHQELL 360 KDAKTFAGKC SHIIDNWACL IKSIEDKKLS VACAKDRLFE LSLRTSLQEW LMERIVEGCK 420 ISEHDERGYT WAVYPFSWSG LSLDYRDKYG RTALHWAAYY GREKMVATLL SAGAKPNLVT 480 DPTSENLGGC TASELASKNG HEGLGAYLAE KAIVAQFKDM ALAGNISGSL QTTTESINPG 540 NFTEEELNLK DSLAAYCTAA DSAARIQAAF RERSLKARTK AVESSNQEME ARNIIVAMKI 600 QHAFRNYEMQ KQLAAAARIQ YRFRTWKMRK EFLHMRRQAI KIQAVFRDFQ VRRHYREIIW 660 SVGVLEKALF RWHLKKKGFR GLQLPSSQVV NHKPDDMEED FFQASRKQAE ERIERSVVRV 720 QAMFRSKQTQ EQYWRMKLEH NKATVIAILE IDSETNFKTP LRFTYIFFLS QLIYEGTLNP 780 DTEME*

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MKSPSAWTCE LVIFGYSQHN GGIEDEVAPT KRDSCNTLQP QVGNEEWIHV YYAHGEDSST  60
FVRRCYWLLD KTLEHVVLVH YRETIAGFSN NKAAPVSSGS ALSGPADMSA SWDLSGQPDS  120
AVDQQYSVSQ HAHLEPNSDM TVQNHEQRLL EINTLEWDDL LAPGDSNMII STQQAGGRTV  180
SVQHTSYEQH NLCELNGYRL NGVSSSLERM STVNNGNEVT FQTADGQMTS SFQENESGVM  240
TDSFGRWMSY LITDPPGSPD DPTPESSAST EILQPVVYRC VVSPQTPGLV NIYLSFDGNK  300
PISQIMSFEF RAPSVHLSTE PPENKSNWDE LALQMRLAHL LFSTSKSLNI LSSKIHQELL  360
KDAKTFAGKC SHIIDNWACL IKSIEDKKLS VACAKDRLFE LSLRTSLQEW LMERIVEGCK  420
ISEHDERGYT WAVYPFSWSG LSLDYRDKYG RTALHWAAYY GREKMVATLL SAGAKPNLVT  480
DPTSENLGGC TASELASKNG HEGLGAYLAE KAIVAQFKDM ALAGNISGSL QTTTESINPG  540
NFTEEELNLK DSLAAYCTAA DSAARIQAAF RERSLKARTK AVESSNQEME ARNIIVAMKI  600
QHAFRNYEMQ KQLAAAARIQ YRFRTWKMRK EFLHMRRQAI KIQAVFRDFQ VRRHYREIIW  660
SVGVLEKALF RWHLKKKGFR GLQLPSSQVV NHKPDDMEED FFQASRKQAE ERIERSVVRV  720
QAMFRSKQTQ EQYWRMKLEH NKATVIAILE IDSETNFKTP LRFTYIFFLS QLIYEGTLNP  780
DTEME*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566051	0.0	JN566051.1 Solanum lycopersicum calmodulin-binding transcription factor SR3L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016549783.1	0.0	PREDICTED: LOW QUALITY PROTEIN: calmodulin-binding transcription activator 6
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2G2YBN1	0.0	A0A2G2YBN1_CAPAN; Calmodulin-binding transcription activator 5 (Fragment)
STRING	Solyc12g099340.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]