PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g21100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 32949.6 Da PI: 7.6596 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 7.9e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +lv++++ +G g+W+t a++ g++Rt+k+c++rw++yl CA12g21100 14 RGPWTVEEDFILVNYIAHHGEGRWNTLAHCAGLKRTGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ CA12g21100 67 RGNITLEEQLLILQLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 110 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.852 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.12E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.22 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-6 | 87 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDKIRENNIV ELKRGPWTVE EDFILVNYIA HHGEGRWNTL AHCAGLKRTG KSCRLRWLNY 60 LRPDVRRGNI TLEEQLLILQ LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKQLK 120 CDVNSKQFKD TLHYLWIPRL VERIKASTNS NNNQVNNIQQ TNYDNIIINN NNNNNNNIVQ 180 NVMNNFKQEN YSSTTTTSSE NSFGSTQISD MSDNCYTNYP LNQGDYHGEI LINPTSDYFQ 240 HGIIDDNNHQ QNMSQLFFDD VSDKFWNQED MLFLQQQLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-26 | 11 | 108 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 1e-122 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552281.1 | 1e-148 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A1U8F0V3 | 1e-147 | A0A1U8F0V3_CAPAN; Transcription factor | ||||
TrEMBL | A0A2G2YBQ1 | 1e-147 | A0A2G2YBQ1_CAPAN; transcription factor MYB108-like | ||||
STRING | PGSC0003DMT400011748 | 1e-125 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 2e-78 | myb domain protein 108 |