PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g20310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | G2-like | ||||||||
Protein Properties | Length: 294aa MW: 32432.7 Da PI: 6.6745 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.9 | 2.7e-34 | 51 | 105 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl CA12g20310 51 RPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKAMGVKGLTLYHLKSHLQKYRL 105 59****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-32 | 48 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.03 | 48 | 108 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-17 | 50 | 107 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-24 | 52 | 106 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-9 | 53 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-25 | 149 | 195 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MKMYSGLGME RNGGMGEYHN HHFHHNLQSS ITGEMNNLVG DACLVLTADH RPRLRWTAEL 60 HERFVDAVTQ LGGPDKATPK TIMKAMGVKG LTLYHLKSHL QKYRLGKQSK EAAENYKDES 120 CMAESQDTSS TASGSSKVVA QDINDCGYQV TEAFRVQMEV QRRLQEQLEV QRHVQLRIEA 180 QGKYLQTILE KACKALNYTA LESPELDTAR EQLSELAIKG ANANNCDGIV AVSSLPEVVT 240 SFENQNASDM PATSLVSPTS IGVLKKRPRP LANGDALPVE DNMTPVQWMM TNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-19 | 51 | 107 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-19 | 51 | 107 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-19 | 51 | 107 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 51 | 107 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 51 | 107 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 51 | 107 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-19 | 51 | 107 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-19 | 51 | 107 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-19 | 51 | 107 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-19 | 51 | 107 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-19 | 51 | 107 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-19 | 51 | 107 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 269 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 3e-89 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016551770.1 | 0.0 | PREDICTED: myb family transcription factor APL isoform X1 | ||||
Swissprot | Q8LAJ7 | 1e-101 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A1U8F7R6 | 0.0 | A0A1U8F7R6_CAPAN; Myb family transcription factor APL | ||||
TrEMBL | A0A2G2YAW1 | 0.0 | A0A2G2YAW1_CAPAN; myb family transcription factor APL isoform X1 | ||||
STRING | PGSC0003DMT400011598 | 1e-177 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3791 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 6e-83 | G2-like family protein |
Publications ? help Back to Top | |||
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