PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g19270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | CO-like | ||||||||
Protein Properties | Length: 370aa MW: 41108.1 Da PI: 6.2579 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.2 | 2.8e-07 | 11 | 43 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ ++ +lC C +++H CA12g19270 11 KLCDSCKTTSATVFCRADSAFLCLLCDSKIHAA 43 68******99*********************54 PP | |||||||
2 | zf-B_box | 28.2 | 3.9e-09 | 53 | 98 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ CA12g19270 53 VWVCEVCEQAPASVTCKADAAALCVTCDNDIHSAnplarrHERVPV 98 689*****************************66899999*99986 PP | |||||||
3 | CCT | 70.5 | 4.3e-24 | 305 | 348 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ CA12g19270 305 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 348 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.9E-11 | 8 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.281 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.9E-6 | 11 | 50 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.84E-8 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.793 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-7 | 53 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.14E-8 | 54 | 98 | No hit | No description |
SMART | SM00336 | 1.9E-10 | 56 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.5E-18 | 305 | 347 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.896 | 305 | 347 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MGLDTWSLTA KLCDSCKTTS ATVFCRADSA FLCLLCDSKI HAANKLASRH ARVWVCEVCE 60 QAPASVTCKA DAAALCVTCD NDIHSANPLA RRHERVPVVP FYDSNVEVKS HGGTDGDDDE 120 VIMMKIYTHV HRNQHMMYKI NSCPLEEAEA ASWILQNPKE VTDDQHQYKS SCVGDFSFND 180 MDSYLDMDIM SIEQKPQIHH HHPEHQHHGN YSSTDGVVPE ATTYLPGPVV DGFPSYEMDF 240 AGSKPYLYNF NSQSISQSVS SSSMDVGVVP DHSIMTDESN TFMITSSALG AVGDTAPNPL 300 SGVDREARVM RYREKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTEI EIDSLIAVDA 360 SSYGVVPSF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016551930.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4 isoform X1 | ||||
Swissprot | Q940T9 | 2e-97 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A2G2YAN6 | 0.0 | A0A2G2YAN6_CAPAN; Zinc finger protein CONSTANS-LIKE 4 | ||||
STRING | Solyc12g096500.1.1 | 1e-175 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 6e-95 | CONSTANS-like 4 |