PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g19100
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 329aa    MW: 35817 Da    PI: 9.4652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g19100genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48.2e-30248306259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D+++WrKYGqK++kgs++pr+YY+Ct   gCp+kk+ver+ +dp ++++tYe+eH+h+
  CA12g19100 248 SDECSWRKYGQKSIKGSPYPRAYYKCTNFpGCPAKKHVERAMDDPMMLIVTYEEEHRHT 306
                 699************************877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30240307IPR003657WRKY domain
PROSITE profilePS5081126.934242308IPR003657WRKY domain
SuperFamilySSF1182902.35E-25245306IPR003657WRKY domain
SMARTSM007742.1E-35247307IPR003657WRKY domain
PfamPF031066.0E-26249305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVMFSKMNEE LALQEAASTG LKTMEHLIKL AANESVVKVD CREITDFAVA KLKKANAMVG  60
RTGHARFRRG PIQVQAQNEA ESQAQTQAKV HDSLTTLSLS PYGYMEKERV LTPTQLSAVA  120
PVHSGLTLDF RKPIVNTGVG TNVGGGAGVM KWKEFFGSME NAIGSSSFLS SIIGEGSGCI  180
ADVASLSSSM SLLPTAQVVS AGEQPSAAEK RCREQEQSGD GSGKKRKVFP RKVIRTPIIS  240
SKFADIPSDE CSWRKYGQKS IKGSPYPRAY YKCTNFPGCP AKKHVERAMD DPMMLIVTYE  300
EEHRHTQAAM QKYNSQMMAF GSMEGKKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22235305271WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549073.10.0PREDICTED: probable WRKY transcription factor 11
TrEMBLA0A1U8EPI10.0A0A1U8EPI1_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YAI30.0A0A2G2YAI3_CAPAN; probable WRKY transcription factor 11
STRINGPGSC0003DMT4000755311e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31452250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.26e-74WRKY DNA-binding protein 11