PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g14940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 32298.8 Da PI: 4.664 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.8e-19 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a++ +++++g CA12g14940 24 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFSTAEEAARAYDVEARRIRG 73 69*******.**********94....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.45E-33 | 24 | 82 | No hit | No description |
SMART | SM00380 | 1.4E-36 | 24 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-22 | 24 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.065 | 24 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 24 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 25 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-12 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-12 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
SKSLNSVDSN KEIEKSSKRK RKNQYRGIRQ RPWGKWAAEI RDPQKGVRVW LGTFSTAEEA 60 ARAYDVEARR IRGNKAKVNF PDEAPVPAPR QAAKVNPEKV LSDESSNPVL SDTALMNLTD 120 GCCNNLGFFE EKTKKLYGYE VLRTTTVNMG PNSYVPPPAA GVYFNSDQGS NSFDPSDFGW 180 GETCSRTPEI SSVLSAAIEC DETQFVEGAD VEVKLKSCSN NLVPDDGNTA NKPPEEFPAF 240 ESQMKFFHTP YPEANWDVSV DAFLNADASQ GGENAVDLWS IDELSSLMRG VY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 24 | 81 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF169943 | 0.0 | KF169943.1 Capsicum annuum var. annuum cultivar Criollo de Morales 334 jasmonic acid and ethylene responsive factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016572993.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A1U8GW13 | 0.0 | A0A1U8GW13_CAPAN; ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A2G2Y949 | 0.0 | A0A2G2Y949_CAPAN; Ethylene-responsive transcription factor RAP2-3 | ||||
STRING | PGSC0003DMT400074248 | 1e-164 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-47 | related to AP2 12 |