PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g14430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 270aa MW: 30539.5 Da PI: 7.5324 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa +++a+++++g CA12g14430 60 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALVYDEAALRFKG 109 7********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-32 | 59 | 118 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-13 | 60 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 60 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.72E-33 | 60 | 118 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.474 | 60 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MSAMVSVLSQ VIGNTNNNNA TTNISSLSSV HGINPLTLPQ SAVATTNQIQ EQGNQLRKRH 60 YRGVRQRPWG KWAAEIRDPK KAARVWLGTF DTAEAAALVY DEAALRFKGN KAKLNFPERV 120 QSGNTQYLAT THHHQQQLFD HQQQHYSSIN NNNNNIFDLI SHMVTQPNLY QQHFPNVHHY 180 TELLPGGSNN NIDHMMNFGV SEPSFYHQQS SSGGNFASPN TSLELQQQQS SYYYNQEEDF 240 LRFPMNFWNS STSIGPPSES NWDDFGPRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 57 | 123 | 2 | 69 | ATERF1 |
3gcc_A | 1e-28 | 57 | 123 | 2 | 69 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-51 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549660.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF114-like, partial | ||||
TrEMBL | A0A1U8F1Z1 | 0.0 | A0A1U8F1Z1_CAPAN; ethylene-responsive transcription factor ERF114-like | ||||
STRING | Solyc12g042210.1.1 | 1e-93 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 7e-36 | ERF family protein |