PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g13900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 30553 Da PI: 5.0558 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.7 | 1e-16 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ + +Wv+e+r+pse +kr++lg++ tae+Aa+a++ a+++l+g CA12g13900 91 IYRGVRRRN-NDKWVCEVREPSE---QKRIWLGSYLTAEMAARAHDVAALALRG 140 69****887.8*********976...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.17E-28 | 90 | 150 | No hit | No description |
Pfam | PF00847 | 6.2E-11 | 90 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-25 | 91 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-19 | 91 | 150 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-28 | 91 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.916 | 91 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-6 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-6 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MYKYTRHIRL LQQTTNYQQI QNSSIILSTP DSINQNSKAE ILLRPTTTMN NSSSCSSVRM 60 EASDEQSFLL ASSKPKKNAG RKKFKETRHP IYRGVRRRNN DKWVCEVREP SEQKRIWLGS 120 YLTAEMAARA HDVAALALRG QLATLNFADS AWLLQVPVSN DPKELRQAAA RAAEAFGPRG 180 NSNINVDVDI GDEEMKEVEP QDNVVDNYNV VVEENGSNVM YSSSCGIEEW QANMEQGCMF 240 SPNPCLYGSH FSWDEDVESD VEVSLWNYSL * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549804.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1C-like | ||||
TrEMBL | A0A1U8F0X5 | 0.0 | A0A1U8F0X5_CAPAN; dehydration-responsive element-binding protein 1C-like | ||||
STRING | XP_009777001.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 1e-41 | ERF family protein |