PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g13110

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 838aa MW: 92563 Da PI: 6.42

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g13110	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.4e-19	14	72	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ CA12g13110 14 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 72 5679*****************************************************97 PP
2	START	170.9	8.5e-54	158	365	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++e+l+ + ++ g+++l +++l CA12g13110 158 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAngGTIELLYMQL 255 789*****************************************************.8888888888************9999****** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+p Rdf+ +Ry+ +g++v++++S+ ++q+ p+ +++vRae lpSg+li+p+++ +s v +v+h++l++++++++lr+l++s+++ ++ CA12g13110 256 YAPTTLAPpRDFWLLRYTTVTDDGSFVVCERSLRNTQNGPSmppVQNFVRAEILPSGYLIRPCEGSGSIVRIVDHMNLEAWSVPEVLRPLYESSAVLAQ 354 ***********************************9988899************************************************* PP HHHHHHTXXXX CS START 194 ktwvatlqrqc 204 kt++a+l++++ CA12g13110 355 KTTMAALRQLR 365 *****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.807	9	73	IPR001356	Homeobox domain
SMART	SM00389	2.3E-16	11	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-17	12	75	IPR009057	Homeodomain-like
CDD	cd00086	9.85E-17	14	74	No hit	No description
Pfam	PF00046	1.1E-16	15	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-18	16	72	IPR009057	Homeodomain-like
CDD	cd14686	2.63E-5	66	104	No hit	No description
PROSITE profile	PS50848	26.662	148	363	IPR002913	START domain
CDD	cd08875	3.47E-73	152	367	No hit	No description
Gene3D	G3DSA:3.30.530.20	4.4E-25	157	363	IPR023393	START-like domain
SuperFamily	SSF55961	1.37E-36	157	365	No hit	No description
SMART	SM00234	2.0E-39	157	367	IPR002913	START domain
Pfam	PF01852	3.4E-51	158	365	IPR002913	START domain
Pfam	PF08670	8.8E-49	694	836	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MSCKDGRSVE DNGKYVRYTP EQVEALERLY HECPKPSSMR RQQLIRECPI LSHIEPRQIK 60 VWFQNRRCRE KQRKESSRLQ GVNRKLSAMN KLLVEENDRL QKQVTQLVYE NGYFLKQTQT 120 TKLASKDSSC ESVVTSGQHH LTPQHPPRDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM 180 PGMKPGPDSI GIIAISHGCT GMAARACGLV GLDPTRVAEI LKDRPSWYRD CRAVEVLNML 240 PTANGGTIEL LYMQLYAPTT LAPPRDFWLL RYTTVTDDGS FVVCERSLRN TQNGPSMPPV 300 QNFVRAEILP SGYLIRPCEG SGSIVRIVDH MNLEAWSVPE VLRPLYESSA VLAQKTTMAA 360 LRQLRQLTLE FLQPNVTNWG RRPAALRALS KRLSRGFNEA LNGFSSEGWS MQDNDGIDDV 420 AILVNSSPDR RMGLNLSFSD GFTSISNGVL CAKASMLLQS VTPAVLLRFL REHRSEWVDN 480 NIDAYSAAAV KVGPCSLPGA RVANFGGQVI LPLAHTVEHE EASLLEVIKL EGVCHSPEDV 540 IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP 600 NRTLDLTSAL ETGPVGSEVA NDLKATDGTS KCIMTMAFQF AFESHMQENV ASMARKYVRS 660 FISSVQRVAL ALSPSHFGFL GGLRLPLGTP EAHTLARWIC QSYRCFLAVE LPKLSSEGSE 720 SILDNLWHHS DAIICCSAKA MPVFTFANQA GLDMLETTLV ALQDVSLEKI FDEHGRKNLC 780 SEFPQIMQQG FAFLQGGICL STMGRPVSYE KAVAWKVLNE EDTAHCISFM FVNWSFV*

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MSCKDGRSVE DNGKYVRYTP EQVEALERLY HECPKPSSMR RQQLIRECPI LSHIEPRQIK  60
VWFQNRRCRE KQRKESSRLQ GVNRKLSAMN KLLVEENDRL QKQVTQLVYE NGYFLKQTQT  120
TKLASKDSSC ESVVTSGQHH LTPQHPPRDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM  180
PGMKPGPDSI GIIAISHGCT GMAARACGLV GLDPTRVAEI LKDRPSWYRD CRAVEVLNML  240
PTANGGTIEL LYMQLYAPTT LAPPRDFWLL RYTTVTDDGS FVVCERSLRN TQNGPSMPPV  300
QNFVRAEILP SGYLIRPCEG SGSIVRIVDH MNLEAWSVPE VLRPLYESSA VLAQKTTMAA  360
LRQLRQLTLE FLQPNVTNWG RRPAALRALS KRLSRGFNEA LNGFSSEGWS MQDNDGIDDV  420
AILVNSSPDR RMGLNLSFSD GFTSISNGVL CAKASMLLQS VTPAVLLRFL REHRSEWVDN  480
NIDAYSAAAV KVGPCSLPGA RVANFGGQVI LPLAHTVEHE EASLLEVIKL EGVCHSPEDV  540
IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP  600
NRTLDLTSAL ETGPVGSEVA NDLKATDGTS KCIMTMAFQF AFESHMQENV ASMARKYVRS  660
FISSVQRVAL ALSPSHFGFL GGLRLPLGTP EAHTLARWIC QSYRCFLAVE LPKLSSEGSE  720
SILDNLWHHS DAIICCSAKA MPVFTFANQA GLDMLETTLV ALQDVSLEKI FDEHGRKNLC  780
SEFPQIMQQG FAFLQGGICL STMGRPVSYE KAVAWKVLNE EDTAHCISFM FVNWSFV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016550961.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1U8EX46	0.0	A0A1U8EX46_CAPAN; homeobox-leucine zipper protein ATHB-15-like isoform X2
STRING	PGSC0003DMT400068037	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]